1LSH | pdb_00001lsh

LIPID-PROTEIN INTERACTIONS IN LIPOVITELLIN

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd1lshb_ Membrane and cell surface proteins and peptides Lipovitellin-phosvitin complex beta-sheet shell regions Lipovitellin-phosvitin complex beta-sheet shell regions (Ichthyomyzon unicuspis ) [TaxId: 30308 ], SCOPe (2.08)
Ad1lsha1 All alpha proteins alpha-alpha superhelix Lipovitellin-phosvitin complex, superhelical domain Lipovitellin-phosvitin complex, superhelical domain Lipovitellin-phosvitin complex, superhelical domain (Ichthyomyzon unicuspis ) [TaxId: 30308 ], SCOPe (2.08)
Ad1lsha2 Membrane and cell surface proteins and peptides Lipovitellin-phosvitin complex beta-sheet shell regions Lipovitellin-phosvitin complex beta-sheet shell regions (Ichthyomyzon unicuspis ) [TaxId: 30308 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2 FamilyLipovitellin-phosvitin complex beta-sheet shell regions 8029077 4003109 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyLipovitellin-phosvitin complex beta-sheet shell regions 8041456 3000269 SCOP2 (2022-06-29)
ASCOP2 FamilyLipovitellin-phosvitin complex, superhelical domain 8029076 4001323 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyLipovitellin-phosvitin complex, superhelical domain 8041455 3001293 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BDUF1944e1lshB1 A: beta meandersX: Lipovitellin-phosvitin complexH: Lipovitellin LV-2 (From Topology)T: Lipovitellin LV-2F: DUF1944ECOD (1.6)
AVitellogenin_N_1ste1lshA1 A: beta meandersX: Lipovitellin-phosvitin complexH: Lipovitellin LV-1N (From Topology)T: Lipovitellin LV-1NF: Vitellogenin_N_1stECOD (1.6)
ADUF1943e1lshA2 A: beta meandersX: Lipovitellin-phosvitin complexH: Lipovitellin LV-1C (From Topology)T: Lipovitellin LV-1CF: DUF1943ECOD (1.6)
AVitellogenin_N_2nde1lshA3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Vitellogenin_N_2ndECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.20.90.10 Mainly Beta Single Sheet Lipovitellin-phosvitin complex beta-sheet shell regionsCATH (4.3.0)
A2.30.230.10 Mainly Beta Roll Lipovitellin-phosvitin complex beta-sheet shell regionsCATH (4.3.0)
A1.25.10.20 Mainly Alpha Alpha Horseshoe Leucine-rich Repeat Variant Vitellinogen, superhelicalCATH (4.3.0)
A2.20.50.20 Mainly Beta Single Sheet Outer Surface Protein A domain 2CATH (4.3.0)
A2.20.80.10 Mainly Beta Single Sheet Lipovitellin-phosvitin complex, chain A, domain 4 Lipovitellin-phosvitin complex, chain A, domain 4CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF09175Vitellinogen, beta-sheet shell (Vit_b-sht_shell)Vitellinogen, beta-sheet shellThis entry represents the beta-sheet shell domain found in vitellinogen, which generally corresponds to the lipovitellin-2 peptide product. This domain consists of several large open beta-sheets [1]. Domain
PF09172Vitellinogen, open beta-sheet (Vit_open_b-sht)Vitellinogen, open beta-sheetThis entry represents the open beta-sheet domain found in vitellinogen, which generally corresponds to a domain within the lipovitellin-1 peptide product. This domain adopts a structure consisting of several large open beta-sheets [1]. Domain
PF01347Lipoprotein amino terminal region (Vitellogenin_N)Lipoprotein amino terminal region- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
LIPOVITELLIN (LV-2) -
LIPOVITELLIN (LV-1N, LV-1C) -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR011030Lipovitellin-phosvitin complex, superhelical domainHomologous Superfamily
IPR015817Vitellinogen, open beta-sheet, subdomain 1Homologous Superfamily
IPR015816Vitellinogen, beta-sheet N-terminalHomologous Superfamily
IPR015258Vitellinogen, beta-sheet shellDomain
IPR001846von Willebrand factor, type D domainDomain
IPR015255Vitellinogen, open beta-sheetDomain
IPR001747Vitellogenin, N-terminalDomain
IPR015819Lipid transport protein, beta-sheet shellHomologous Superfamily
IPR050733Vitellogenin/ApolipophorinFamily
IPR037088Vitellinogen, beta-sheet shell domain superfamilyHomologous Superfamily
IPR011030Lipovitellin-phosvitin complex, superhelical domainHomologous Superfamily
IPR015817Vitellinogen, open beta-sheet, subdomain 1Homologous Superfamily
IPR015816Vitellinogen, beta-sheet N-terminalHomologous Superfamily
IPR015258Vitellinogen, beta-sheet shellDomain
IPR001846von Willebrand factor, type D domainDomain
IPR015255Vitellinogen, open beta-sheetDomain
IPR001747Vitellogenin, N-terminalDomain
IPR015819Lipid transport protein, beta-sheet shellHomologous Superfamily
IPR050733Vitellogenin/ApolipophorinFamily
IPR037088Vitellinogen, beta-sheet shell domain superfamilyHomologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B
OPMMonotopic/peripheralAlpha + Beta monotopic/peripheralApolipoprotein of LDL particlesVitellogenin

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
PCA Parent Component: GLN

RESID:  AA0031

PSI-MOD :  2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420