1N59 | pdb_00001n59

Crystal structure of the Murine class I Major Histocompatibility Complex of H-2KB, B2-Microglobulin, and A 9-Residue immunodominant peptide epitope gp33 derived from LCMV


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054571 3000071 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054571 3000071 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyMHC antigen-recognition domain 8036210 3000521 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054611 3000071 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMHC antigen-recognition domain 8036210 3000521 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054611 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BCopper-binde1n59B1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: Copper-bindECOD (v294.1)
E [auth D]Copper-binde1n59D1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: Copper-bindECOD (v294.1)
D [auth C]Copper-binde1n59C1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: Copper-bindECOD (v294.1)
D [auth C]MHC_I_3e1n59C2 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: ETN0001 domain-likeT: Mss4-likeF: MHC_I_3ECOD (v294.1)
ACopper-binde1n59A1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: Copper-bindECOD (v294.1)
AMHC_I_3e1n59A2 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: ETN0001 domain-likeT: Mss4-likeF: MHC_I_3ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B,
E [auth D]
MH1-K1b (H2-K1b) B2M Mus musculus (house mouse) B2M*01 C-LIKE-DOMAIN C-LIKE MH MH1-ALPHA_B2M IMGT (202611-0)
A,
D [auth C]
MH1-K1b (H2-K1b) I-ALPHA Mus musculus (house mouse) MH1-K1b G-DOMAIN G-ALPHA1, G-DOMAIN G-ALPHA2, C-LIKE-DOMAIN C-LIKE MH MH1-ALPHA_B2M IMGT (202611-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B,
E [auth D]
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
A,
D [auth C]
PF00129Class I Histocompatibility antigen, domains alpha 1 and 2 (MHC_I)Class I Histocompatibility antigen, domains alpha 1 and 2Domain
A,
D [auth C]
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth P],
F [auth Q]
nonameric peptide, gp33 derived from lymphocytic choriomeningitis virus
B,
E [auth D]
Beta-2-microglobulin
A,
D [auth C]
H-2 class I histocompatibility antigen, K-B alpha chain

InterPro: Protein Family Classification InterPro Database Homepage