1T6S | pdb_00001t6s

Crystal structure of a conserved hypothetical protein from Chlorobium tepidum

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1t6sb1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	ScpB/YpuH-like	Segregation and condensation protein B, ScpB	(Chlorobaculum tepidum TLS ) [TaxId: 194439 ],	SCOPe (2.08)
A	d1t6sa1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	ScpB/YpuH-like	Segregation and condensation protein B, ScpB	(Chlorobaculum tepidum TLS ) [TaxId: 194439 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Winged helix DNA-binding domain	8003269	3000034	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Winged helix DNA-binding domain	8003270	3000034	SCOP2B (2022-06-29)
A	SCOP2 Family	ScpB/YpuH-like	8003268	4000257	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Winged helix DNA-binding domain	8003269	3000034	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Winged helix DNA-binding domain	8003270	3000034	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	SMC_ScpB_C	e1t6sB2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: SMC_ScpB_C	ECOD (1.6)
B	SMC_ScpB_N	e1t6sB1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: SMC_ScpB_N	ECOD (1.6)
A	SMC_ScpB_C	e1t6sA2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: SMC_ScpB_C	ECOD (1.6)
A	SMC_ScpB_N	e1t6sA1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: SMC_ScpB_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
A	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF04079	Segregation and condensation complex subunit ScpB (SMC_ScpB)	Segregation and condensation complex subunit ScpB	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	conserved hypothetical protein	-	chromosome separation cellular process cell cycle chromosome segregation cell cycle process cell division	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR005234	Chromosome segregation/condensation protein ScpB	Family
A, B	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, B	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.