1WCE | pdb_00001wce

Crystal structure of the T13 IBDV viral particle reveals a missing link in icosahedral viruses evolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
M	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089352	3000918	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089352	3000918	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089352	3000918	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089352	3000918	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089352	3000918	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089352	3000918	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089352	3000918	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
F	SCOP2 Family	Birnaviridae-like VP	8089351	4001636	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	Positive stranded ssRNA viruses-like	8089352	3000918	SCOP2 (2022-06-29)
E	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089352	3000918	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089352	3000918	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089352	3000918	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089352	3000918	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089352	3000918	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089991	3000918	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
M	Birna_VP2	e1wceM1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Birna_VP2	ECOD (1.6)
L	Birna_VP2	e1wceL1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Birna_VP2	ECOD (1.6)
K	Birna_VP2	e1wceK1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Birna_VP2	ECOD (1.6)
J	Birna_VP2	e1wceJ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Birna_VP2	ECOD (1.6)
I	Birna_VP2	e1wceI1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Birna_VP2	ECOD (1.6)
H	Birna_VP2	e1wceH1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Birna_VP2	ECOD (1.6)
G	Birna_VP2	e1wceG1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Birna_VP2	ECOD (1.6)
F	Birna_VP2	e1wceF1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Birna_VP2	ECOD (1.6)
E	Birna_VP2	e1wceE1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Birna_VP2	ECOD (1.6)
D	Birna_VP2	e1wceD1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Birna_VP2	ECOD (1.6)
C	Birna_VP2	e1wceC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Birna_VP2	ECOD (1.6)
B	Birna_VP2	e1wceB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Birna_VP2	ECOD (1.6)
A	Birna_VP2	e1wceA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Birna_VP2	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M	PF01766	Birnavirus VP2 protein (Birna_VP2)	Birnavirus VP2 protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M	MAJOR STRUCTURAL PROTEIN VP2	structural molecule activity peptidase activity serine hydrolase activity catalytic activity, acting on a protein serine-type peptidase activity hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part viral capsid icosahedral viral capsid T=13 icosahedral viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M	IPR043048	Birnavirus VP3, domain 1	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M	IPR002662	Birnavirus VP2 protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M	IPR025775	Birnavirus VP4 protease domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M	IPR002663	Birnavirus VP3 protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M	IPR043049	Birnavirus VP3, domain 2	Homologous Superfamily