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 21WV | pdb_000021wv

In situ structure of the C2S2M2L4-type PSII-LHCII supercomplex from Oryza sativa

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
M [auth 13],
P [auth 16],
S [auth 19],
TB [auth 22]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
JB [auth 1s],
KA [auth 1S]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
L [auth 12],
O [auth 15],
R [auth 18],
SB [auth 21]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
E [auth 04],
I [auth 08]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PB [auth 1y],
QA [auth 1Y]		PF06298Photosystem II protein Y (PsbY) (PsbY)Photosystem II protein Y (PsbY)- Family
NB [auth 1w],
OA [auth 1W]		PF07123Photosystem II reaction centre W protein (PsbW) (PsbW)Photosystem II reaction centre W protein (PsbW)- Family
MB [auth 1v],
NA [auth 1V]		PF04725Photosystem II 10 kDa polypeptide PsbR (PsbR)Photosystem II 10 kDa polypeptide PsbR- Family
IB [auth 1r],
JA [auth 1R]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
HB [auth 1p],
IA [auth 1P]		PF01789PsbP (PsbP)PsbPThis entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be ful ...This entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+ [2]. Structure of CyanoP from Synechocystis sp. revealed that it has an alpha-beta-alpha fold containing 10 beta strands organized into two anti-parallel beta-sheets, packed against alpha-helices. This entry covers the first seven beta-stands (beta1-beta7) and the N-terminal alpha-helix [1].
Domain
GB [auth 1o],
HA [auth 1O]		PF01716Manganese-stabilising protein / photosystem II polypeptide (MSP)Manganese-stabilising protein / photosystem II polypeptide- Family
DB [auth 1l],
EA [auth 1L]		PF02419PsbL protein (PsbL)PsbL protein- Family
XA [auth 1f],
Y [auth 1F]		PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
M [auth 13],
P [auth 16],
S [auth 19],
TB [auth 22]		Chlorophyll a-b binding protein 1, chloroplastic-
TA [auth 1b],
U [auth 1B]		Photosystem II CP47 reaction center protein
UA [auth 1c],
V [auth 1C]		Photosystem II CP43 reaction center protein
VA [auth 1d],
W [auth 1D]		Photosystem II D2 protein
AB [auth 1i],
BA [auth 1I]		Photosystem II reaction center protein I-
CB [auth 1k],
DA [auth 1K]		Photosystem II reaction center protein K-
JB [auth 1s],
KA [auth 1S]		Chlorophyll a-b binding protein, chloroplastic-
SA [auth 1a],
T [auth 1A]		Photosystem II protein D1
L [auth 12],
O [auth 15],
R [auth 18],
SB [auth 21]		Chlorophyll a-b binding protein, chloroplastic-
E [auth 04],
I [auth 08]		Chlorophyll a-b binding protein, chloroplastic-
QB [auth 1z],
RA [auth 1Z]		Photosystem II reaction center protein Z-
PB [auth 1y],
QA [auth 1Y]		Os08g0119800 protein
OB [auth 1x],
PA [auth 1X]		Os07g0673550 protein-
NB [auth 1w],
OA [auth 1W]		Photosystem II reaction center W protein, chloroplastic-
MB [auth 1v],
NA [auth 1V]		Photosystem II 10 kDa polypeptide, chloroplastic-
LB [auth 1u],
MA [auth 1U]		Os02g0581100 protein- - -
KB [auth 1t],
LA [auth 1T]		Photosystem II reaction center protein T-
IB [auth 1r],
JA [auth 1R]		Chlorophyll a-b binding protein, chloroplastic
D [auth 03],
H [auth 07]		Chlorophyll a/b-binding protein- - -
HB [auth 1p],
IA [auth 1P]		23 kDa subunit of oxygen evolving system of photosystem II
GB [auth 1o],
HA [auth 1O]		33 kDa subunit of oxygen evolving system of photosystem II
EB [auth 1m],
FA [auth 1M]		Photosystem II reaction center protein M-
DB [auth 1l],
EA [auth 1L]		Photosystem II reaction center protein L-
BB [auth 1j],
CA [auth 1J]		Photosystem II reaction center protein J-
AA [auth 1H],
ZA [auth 1h]		Photosystem II reaction center protein H
XA [auth 1f],
Y [auth 1F]		Cytochrome b559 subunit beta
WA [auth 1e],
X [auth 1E]		Cytochrome b559 subunit alpha
Chlorophyll a-b binding protein 2, chloroplastic-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
M [auth 13],
P [auth 16],
S [auth 19],
TB [auth 22]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
M [auth 13],
P [auth 16],
S [auth 19],
TB [auth 22]		IPR022796Chlorophyll A-B binding proteinFamily
TA [auth 1b],
U [auth 1B]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
TA [auth 1b],
U [auth 1B]		IPR000932Photosystem antenna protein-likeFamily
TA [auth 1b],
U [auth 1B]		IPR017486Photosystem II CP47 reaction centre proteinFamily
UA [auth 1c],
V [auth 1C]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
UA [auth 1c],
V [auth 1C]		IPR000932Photosystem antenna protein-likeFamily
UA [auth 1c],
V [auth 1C]		IPR005869Photosystem II CP43 reaction centre proteinFamily
UA [auth 1c],
V [auth 1C]		IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
VA [auth 1d],
W [auth 1D]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
VA [auth 1d],
W [auth 1D]		IPR005868Photosystem II D2Family
VA [auth 1d],
W [auth 1D]		IPR000484Photosynthetic reaction centre, L/MFamily
VA [auth 1d],
W [auth 1D]		IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
VA [auth 1d],
W [auth 1D]		IPR055266Photosystem II protein D1/D2Family
AB [auth 1i],
BA [auth 1I]		IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
AB [auth 1i],
BA [auth 1I]		IPR003686Photosystem II PsbIFamily
CB [auth 1k],
DA [auth 1K]		IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
CB [auth 1k],
DA [auth 1K]		IPR003687Photosystem II PsbKFamily
JB [auth 1s],
KA [auth 1S]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
JB [auth 1s],
KA [auth 1S]		IPR022796Chlorophyll A-B binding proteinFamily
SA [auth 1a],
T [auth 1A]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
SA [auth 1a],
T [auth 1A]		IPR005867Photosystem II protein D1Family
SA [auth 1a],
T [auth 1A]		IPR000484Photosynthetic reaction centre, L/MFamily
SA [auth 1a],
T [auth 1A]		IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
SA [auth 1a],
T [auth 1A]		IPR055266Photosystem II protein D1/D2Family
L [auth 12],
O [auth 15],
R [auth 18],
SB [auth 21]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
L [auth 12],
O [auth 15],
R [auth 18],
SB [auth 21]		IPR022796Chlorophyll A-B binding proteinFamily
E [auth 04],
I [auth 08]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
E [auth 04],
I [auth 08]		IPR022796Chlorophyll A-B binding proteinFamily
QB [auth 1z],
RA [auth 1Z]		IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
QB [auth 1z],
RA [auth 1Z]		IPR002644Photosystem II PsbZ, reaction centreFamily
PB [auth 1y],
QA [auth 1Y]		IPR038760Photosystem II PsbY, plantFamily
PB [auth 1y],
QA [auth 1Y]		IPR009388Photosystem II PsbYFamily
OB [auth 1x],
PA [auth 1X]		IPR009518Photosystem II PsbXFamily
NB [auth 1w],
OA [auth 1W]		IPR009806Photosystem II PsbW, class 2Family
MB [auth 1v],
NA [auth 1V]		IPR006814Photosystem II PsbRFamily
LB [auth 1u],
MA [auth 1U]		IPR040296Photosystem II 5kDa protein, chloroplasticFamily
KB [auth 1t],
LA [auth 1T]		IPR001743Photosystem II PsbTFamily
KB [auth 1t],
LA [auth 1T]		IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
IB [auth 1r],
JA [auth 1R]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IB [auth 1r],
JA [auth 1R]		IPR022796Chlorophyll A-B binding proteinFamily
D [auth 03],
H [auth 07]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
D [auth 03],
H [auth 07]		IPR022796Chlorophyll A-B binding proteinFamily
HB [auth 1p],
IA [auth 1P]		IPR006311Twin-arginine translocation pathway, signal sequenceConserved Site
HB [auth 1p],
IA [auth 1P]		IPR002683PsbP, C-terminalDomain
HB [auth 1p],
IA [auth 1P]		IPR016123Mog1/PsbP, alpha/beta/alpha sandwichHomologous Superfamily
GB [auth 1o],
HA [auth 1O]		IPR011250Outer membrane protein/outer membrane enzyme PagP-like, beta-barrel superfamilyHomologous Superfamily
GB [auth 1o],
HA [auth 1O]		IPR002628Photosystem II extrinsic protein OFamily
EB [auth 1m],
FA [auth 1M]		IPR007826Photosystem II PsbMFamily
EB [auth 1m],
FA [auth 1M]		IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
DB [auth 1l],
EA [auth 1L]		IPR003372Photosystem II PsbLFamily
DB [auth 1l],
EA [auth 1L]		IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
BB [auth 1j],
CA [auth 1J]		IPR002682Photosystem II PsbJFamily
BB [auth 1j],
CA [auth 1J]		IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
AA [auth 1H],
ZA [auth 1h]		IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
AA [auth 1H],
ZA [auth 1h]		IPR001056Photosystem II reaction centre protein HFamily
XA [auth 1f],
Y [auth 1F]		IPR006241Photosystem II cytochrome b559, beta subunitFamily
XA [auth 1f],
Y [auth 1F]		IPR013081Photosystem II cytochrome b559, N-terminalDomain
XA [auth 1f],
Y [auth 1F]		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
WA [auth 1e],
X [auth 1E]		IPR013081Photosystem II cytochrome b559, N-terminalDomain
WA [auth 1e],
X [auth 1E]		IPR006217Photosystem II cytochrome b559, alpha subunitFamily
WA [auth 1e],
X [auth 1E]		IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
WA [auth 1e],
X [auth 1E]		IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
WA [auth 1e],
X [auth 1E]		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily