2BL8 | pdb_00002bl8

1.6 Angstrom crystal structure of EntA-im: a bacterial immunity protein conferring immunity to the antimicrobial activity of the pediocin-like bacteriocin, enterocin A


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyBacteriocin immunity protein-like 8033558 3001211 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyBacteriocin immunity protein-like 8033558 3001211 SCOP2B (2022-06-29)
ASCOP2 FamilyEntA-Im 8021178 4001243 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyBacteriocin immunity protein-like 8033558 3001211 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CEntA_Immune2bl8C1 A: alpha bundlesX: Bromodomain-likeH: Carnobacteriocin B2 immunity protein (From Topology)T: Carnobacteriocin B2 immunity proteinF: EntA_ImmunECOD (1.6)
BEntA_Immune2bl8B1 A: alpha bundlesX: Bromodomain-likeH: Carnobacteriocin B2 immunity protein (From Topology)T: Carnobacteriocin B2 immunity proteinF: EntA_ImmunECOD (1.6)
AEntA_Immune2bl8A1 A: alpha bundlesX: Bromodomain-likeH: Carnobacteriocin B2 immunity protein (From Topology)T: Carnobacteriocin B2 immunity proteinF: EntA_ImmunECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C1.20.1440.50 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) Ta0600-likeCATH (4.3.0)
B1.20.1440.50 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) Ta0600-likeCATH (4.3.0)
A1.20.1440.50 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) Ta0600-likeCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF08951Bacteriocin immunity protein family (EntA_Immun)Bacteriocin immunity protein familyGram-positive lactobacilli produce bacteriocins to kill closely-related competitor species [1]. To protect themselves from the bacteriocidal activity of this molecule they co-express an immunity protein (for discussion of this operon see Bacteriocin_ ...Gram-positive lactobacilli produce bacteriocins to kill closely-related competitor species [1]. To protect themselves from the bacteriocidal activity of this molecule they co-express an immunity protein (for discussion of this operon see Bacteriocin_IIc Pfam:PF10439). The immunity protein structure is a soluble, cytoplasmic, antiparallel four alpha-helical globular bundle with a fifth, more flexible and more divergent C-terminal helical hair-pin [2]. The C-terminal hair-pin recognises the C-terminus of the producer bacteriocin and this interaction is sufficient to dis-orient the bacteriocin within the membrane and close up the permeabilising pore that on its own the bacteriocin creates [3]. These immunity proteins interact in the same way with other bacteriocins, family Bacteriocin_II, Pfam:PF01721. Since many enterococci can produce more than one bacteriocin it seems likely that the whole operon can be carried on transferable plasmids [4]. This family also includes ImB2 a protein conferring immunity to antimicrobial activity of the type IIa bacteriocin, carnobacteriocin B2 [5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
ENTEROCINE A IMMUNITY PROTEIN- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR015046Lactococcin-A immunity protein-likeFamily
A, B, C
IPR023130Ta0600-like superfamilyHomologous Superfamily