2DSY | pdb_00002dsy

Crystal structure of TTHA0281 from thermus thermophilus HB8

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2dsyd_	Alpha and beta proteins (a+b)	TTHA1013/TTHA0281-like	TTHA1013/TTHA0281-like	TTHA0281-like	automated matches	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
C	d2dsyc_	Alpha and beta proteins (a+b)	TTHA1013/TTHA0281-like	TTHA1013/TTHA0281-like	TTHA0281-like	automated matches	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
B	d2dsyb_	Alpha and beta proteins (a+b)	TTHA1013/TTHA0281-like	TTHA1013/TTHA0281-like	TTHA0281-like	automated matches	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
A	d2dsya1	Alpha and beta proteins (a+b)	TTHA1013/TTHA0281-like	TTHA1013/TTHA0281-like	TTHA0281-like	Hypothetical protein TTHA0281	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	TTHA1013/TTHA0281-like	8033797	3000880	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TTHA1013/TTHA0281-like	8033797	3000880	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TTHA1013/TTHA0281-like	8033797	3000880	SCOP2B (2022-06-29)
A	SCOP2 Family	TTHA0281-like	8021417	4001747	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	TTHA1013/TTHA0281-like	8033797	3000880	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	CBAH	e2dsyD1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBAH	ECOD (v294.1)
C	CBAH	e2dsyC1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBAH	ECOD (v294.1)
B	CBAH	e2dsyB1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBAH	ECOD (v294.1)
A	UPF0150	e2dsyA1	A: few secondary structure elements	X: TTHA1013/TTHA0281-like	H: TTHA1013/TTHA0281-like	T: TTHA1013/TTHA0281-like	F: UPF0150	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.30.160.250	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain		CATH (4.3.0)
C	3.30.160.250	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain		CATH (4.3.0)
B	3.30.160.250	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain		CATH (4.3.0)
A	3.30.160.250	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF21748	UPF0150-like (UPF0150)	UPF0150-like	This is a family of uncharacterized proteins that fold into an alpha-beta-beta-beta-alpha fold and are structurally similar to HicB-like antitoxin. They are probably involved in RNA metabolism, RNA cleavage and binding [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Hypothetical protein TTHA0281	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR035069	Antitoxin HicB/UPF0150	Homologous Superfamily
A, B, C, D	IPR049389	UPF0150	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.