2PKR | pdb_00002pkr

Crystal structure of (A+CTE)4 chimeric form of photosyntetic glyceraldehyde-3-phosphate dehydrogenase, complexed with NADP

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth O]d2pkro1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
A [auth O]d2pkro2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
B [auth R]d2pkrr1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
B [auth R]d2pkrr2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
C [auth P]d2pkrp1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
C [auth P]d2pkrp2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
D [auth Q]d2pkrq1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
D [auth Q]d2pkrq2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
E [auth A]d2pkra1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
E [auth A]d2pkra2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
F [auth B]d2pkrb1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
F [auth B]d2pkrb2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
G [auth C]d2pkrc1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
G [auth C]d2pkrc2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
H [auth D]d2pkrd1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
H [auth D]d2pkrd2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
I [auth H]d2pkrh1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
I [auth H]d2pkrh2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
J [auth I]d2pkri1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
J [auth I]d2pkri2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
K [auth L]d2pkrl1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
K [auth L]d2pkrl2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
L [auth M]d2pkrm1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
L [auth M]d2pkrm2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) spinach (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth O]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
B [auth R]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
C [auth P]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
D [auth Q]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
E [auth A]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
F [auth B]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
G [auth C]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
H [auth D]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
I [auth H]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
J [auth I]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth O]Gp_dh_Ce2pkrO1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
A [auth O]Gp_dh_Ne2pkrO2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
B [auth R]Gp_dh_Ce2pkrR1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
B [auth R]Gp_dh_Ne2pkrR2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
C [auth P]Gp_dh_Ce2pkrP1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
C [auth P]Gp_dh_Ne2pkrP2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
D [auth Q]Gp_dh_Ce2pkrQ1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
D [auth Q]Gp_dh_Ne2pkrQ2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
E [auth A]Gp_dh_Ce2pkrA1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
E [auth A]Gp_dh_Ne2pkrA2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
F [auth B]Gp_dh_Ce2pkrB1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
F [auth B]Gp_dh_Ne2pkrB2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
G [auth C]Gp_dh_Ce2pkrC1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
G [auth C]Gp_dh_Ne2pkrC2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
H [auth D]Gp_dh_Ce2pkrD1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
H [auth D]Gp_dh_Ne2pkrD2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
I [auth H]Gp_dh_Ce2pkrH1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
I [auth H]Gp_dh_Ne2pkrH2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
J [auth I]Gp_dh_Ce2pkrI1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
J [auth I]Gp_dh_Ne2pkrI2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
K [auth L]Gp_dh_Ce2pkrL1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
K [auth L]Gp_dh_Ne2pkrL2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
L [auth M]Gp_dh_Ce2pkrM1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
L [auth M]Gp_dh_Ne2pkrM2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth O]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
A [auth O]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
B [auth R]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
B [auth R]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
C [auth P]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
C [auth P]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
D [auth Q]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
D [auth Q]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
E [auth A]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
E [auth A]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
F [auth B]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
F [auth B]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
G [auth C]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
G [auth C]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
H [auth D]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
H [auth D]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
I [auth H]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
I [auth H]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
J [auth I]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
J [auth I]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
K [auth L]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
K [auth L]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
L [auth M]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
L [auth M]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02800Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain (Gp_dh_C)Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domainGAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold. Domain
PF00044Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain (Gp_dh_N)Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domainGAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Glyceraldehyde-3-phosphate dehydrogenase Aor

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR020828Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domainDomain
IPR020830Glyceraldehyde 3-phosphate dehydrogenase, active siteActive Site
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
IPR020831Glyceraldehyde/Erythrose phosphate dehydrogenase familyFamily
IPR020829Glyceraldehyde 3-phosphate dehydrogenase, catalytic domainDomain
IPR006424Glyceraldehyde-3-phosphate dehydrogenase, type IFamily