2UX9 | pdb_00002ux9

Crystal structure of the T. thermophilus dodecin R65A mutant

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2ux9a1	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	Uncharacterized protein TTHA1431	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
B	d2ux9b_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
C	d2ux9c_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
E	d2ux9e_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
F	d2ux9f_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
D	d2ux9d_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Dodecin	e2ux9A1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
B	Dodecin	e2ux9B1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
C	Dodecin	e2ux9C1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
E	Dodecin	e2ux9E1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
F	Dodecin	e2ux9F1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
D	Dodecin	e2ux9D1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
B	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
C	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
E	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
F	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
D	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF07311	Dodecin (Dodecin)	Dodecin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	DODECIN	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR036694	Dodecin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR009923	Dodecin	Family
A, B, C, D, E A, B, C, D, E, F	IPR025543	Dodecin-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR050049	Dodecin, bacteria	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.