3BGK | pdb_00003bgk

The crystal structure of hypothetic protein SMU.573 from Streptococcus mutans


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyYjeF C-terminal domain-like 8083705 4002441 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyRibokinase-like 8083706 3001268 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACarb_kinasee3bgkA1 A: a/b three-layered sandwichesX: Rossmann-likeH: Ribokinase-like (From Topology)T: Ribokinase-likeF: Carb_kinaseECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.1190.20 Alpha Beta 3-Layer(aba) Sandwich UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase RibokinaseCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01256NAD(P)H-hydrate dehydratase (Carb_kinase)NAD(P)H-hydrate dehydrataseHydration of NAD(P)H to NAD(P)HX, which inhibits several dehydrogenases, is corrected by an ATP-dependent dehydratase and an epimerase. The ATP-dependent dehydratase has been identified as the product of the vertebrate Carkd (carbohydrate kinase do ...Hydration of NAD(P)H to NAD(P)HX, which inhibits several dehydrogenases, is corrected by an ATP-dependent dehydratase and an epimerase. The ATP-dependent dehydratase has been identified as the product of the vertebrate Carkd (carbohydrate kinase domain) gene [1, 2]. Variants of this enzyme leads to deficient NADHX repair mitochondrial dysfunction in humans, associated with a lethal neurometabolic disorder in early childhood [2]. In E. coli, it is found as the C-terminal domain of a bifunctional enzyme (YjeF) that also includes the epimerase and uses ADP instead of ATP [3]. These enzymes are widespread in eukaryotes, prokaryotes, and archaea.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage