3VDM | pdb_00003vdm

Crystal Structure of VldE, the pseudo-glycosyltransferase which catalyzes non-glycosidic C-N coupling in Validamycin A biosynthesis

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BGlyco_transf_20_Ne3vdmB1 A: a/b three-layered sandwichesX: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)T: UDP-Glycosyltransferase/glycogen phosphorylaseF: Glyco_transf_20_NECOD (1.6)
BGlyco_transf_20_Ce3vdmB2 A: a/b three-layered sandwichesX: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)T: UDP-Glycosyltransferase/glycogen phosphorylaseF: Glyco_transf_20_CECOD (1.6)
AGlyco_transf_20_Ne3vdmA1 A: a/b three-layered sandwichesX: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)T: UDP-Glycosyltransferase/glycogen phosphorylaseF: Glyco_transf_20_NECOD (1.6)
AGlyco_transf_20_Ce3vdmA2 A: a/b three-layered sandwichesX: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)T: UDP-Glycosyltransferase/glycogen phosphorylaseF: Glyco_transf_20_CECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.40.50.2000 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Glycogen Phosphorylase BCATH (4.3.0)
A3.40.50.2000 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Glycogen Phosphorylase BCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00982Glycosyltransferase family 20 (Glyco_transf_20)Glycosyltransferase family 20- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
VldE -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR001830Glycosyl transferase, family 20Family