3WSH | pdb_00003wsh

EDTA-treated, oxidized HcgD from Methanocaldococcus jannaschii

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3wsha_	Alpha and beta proteins (a/b)	NIF3 (NGG1p interacting factor 3)-like	NIF3 (NGG1p interacting factor 3)-like	automated matches	automated matches	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
B	d3wshb_	Alpha and beta proteins (a/b)	NIF3 (NGG1p interacting factor 3)-like	NIF3 (NGG1p interacting factor 3)-like	automated matches	automated matches	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
C	d3wshc_	Alpha and beta proteins (a/b)	NIF3 (NGG1p interacting factor 3)-like	NIF3 (NGG1p interacting factor 3)-like	automated matches	automated matches	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
D	d3wshd_	Alpha and beta proteins (a/b)	NIF3 (NGG1p interacting factor 3)-like	NIF3 (NGG1p interacting factor 3)-like	automated matches	automated matches	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
E	d3wshe_	Alpha and beta proteins (a/b)	NIF3 (NGG1p interacting factor 3)-like	NIF3 (NGG1p interacting factor 3)-like	automated matches	automated matches	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
F	d3wshf_	Alpha and beta proteins (a/b)	NIF3 (NGG1p interacting factor 3)-like	NIF3 (NGG1p interacting factor 3)-like	automated matches	automated matches	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
G	d3wshg_	Alpha and beta proteins (a/b)	NIF3 (NGG1p interacting factor 3)-like	NIF3 (NGG1p interacting factor 3)-like	automated matches	automated matches	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
H	d3wshh_	Alpha and beta proteins (a/b)	NIF3 (NGG1p interacting factor 3)-like	NIF3 (NGG1p interacting factor 3)-like	automated matches	automated matches	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
I	d3wshi_	Alpha and beta proteins (a/b)	NIF3 (NGG1p interacting factor 3)-like	NIF3 (NGG1p interacting factor 3)-like	automated matches	automated matches	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
J	d3wshj_	Alpha and beta proteins (a/b)	NIF3 (NGG1p interacting factor 3)-like	NIF3 (NGG1p interacting factor 3)-like	automated matches	automated matches	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
K	d3wshk_	Alpha and beta proteins (a/b)	NIF3 (NGG1p interacting factor 3)-like	NIF3 (NGG1p interacting factor 3)-like	automated matches	automated matches	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
L	d3wshl_	Alpha and beta proteins (a/b)	NIF3 (NGG1p interacting factor 3)-like	NIF3 (NGG1p interacting factor 3)-like	automated matches	automated matches	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	NIF3_1st	e3wshA2	A: a/b three-layered sandwiches	X: NIF3 (NGG1p interacting factor 3)-like (From Topology)	H: NIF3 (NGG1p interacting factor 3)-like (From Topology)	T: NIF3 (NGG1p interacting factor 3)-like	F: NIF3_1st	ECOD (1.6)
B	NIF3_1st	e3wshB1	A: a/b three-layered sandwiches	X: NIF3 (NGG1p interacting factor 3)-like (From Topology)	H: NIF3 (NGG1p interacting factor 3)-like (From Topology)	T: NIF3 (NGG1p interacting factor 3)-like	F: NIF3_1st	ECOD (1.6)
C	NIF3_1st	e3wshC2	A: a/b three-layered sandwiches	X: NIF3 (NGG1p interacting factor 3)-like (From Topology)	H: NIF3 (NGG1p interacting factor 3)-like (From Topology)	T: NIF3 (NGG1p interacting factor 3)-like	F: NIF3_1st	ECOD (1.6)
D	NIF3_1st	e3wshD2	A: a/b three-layered sandwiches	X: NIF3 (NGG1p interacting factor 3)-like (From Topology)	H: NIF3 (NGG1p interacting factor 3)-like (From Topology)	T: NIF3 (NGG1p interacting factor 3)-like	F: NIF3_1st	ECOD (1.6)
E	NIF3_1st	e3wshE2	A: a/b three-layered sandwiches	X: NIF3 (NGG1p interacting factor 3)-like (From Topology)	H: NIF3 (NGG1p interacting factor 3)-like (From Topology)	T: NIF3 (NGG1p interacting factor 3)-like	F: NIF3_1st	ECOD (1.6)
F	NIF3_1st	e3wshF1	A: a/b three-layered sandwiches	X: NIF3 (NGG1p interacting factor 3)-like (From Topology)	H: NIF3 (NGG1p interacting factor 3)-like (From Topology)	T: NIF3 (NGG1p interacting factor 3)-like	F: NIF3_1st	ECOD (1.6)
G	NIF3_1st	e3wshG2	A: a/b three-layered sandwiches	X: NIF3 (NGG1p interacting factor 3)-like (From Topology)	H: NIF3 (NGG1p interacting factor 3)-like (From Topology)	T: NIF3 (NGG1p interacting factor 3)-like	F: NIF3_1st	ECOD (1.6)
H	NIF3_1st	e3wshH1	A: a/b three-layered sandwiches	X: NIF3 (NGG1p interacting factor 3)-like (From Topology)	H: NIF3 (NGG1p interacting factor 3)-like (From Topology)	T: NIF3 (NGG1p interacting factor 3)-like	F: NIF3_1st	ECOD (1.6)
I	NIF3_1st	e3wshI2	A: a/b three-layered sandwiches	X: NIF3 (NGG1p interacting factor 3)-like (From Topology)	H: NIF3 (NGG1p interacting factor 3)-like (From Topology)	T: NIF3 (NGG1p interacting factor 3)-like	F: NIF3_1st	ECOD (1.6)
J	NIF3_1st	e3wshJ2	A: a/b three-layered sandwiches	X: NIF3 (NGG1p interacting factor 3)-like (From Topology)	H: NIF3 (NGG1p interacting factor 3)-like (From Topology)	T: NIF3 (NGG1p interacting factor 3)-like	F: NIF3_1st	ECOD (1.6)
K	NIF3_1st	e3wshK1	A: a/b three-layered sandwiches	X: NIF3 (NGG1p interacting factor 3)-like (From Topology)	H: NIF3 (NGG1p interacting factor 3)-like (From Topology)	T: NIF3 (NGG1p interacting factor 3)-like	F: NIF3_1st	ECOD (1.6)
L	NIF3_1st	e3wshL1	A: a/b three-layered sandwiches	X: NIF3 (NGG1p interacting factor 3)-like (From Topology)	H: NIF3 (NGG1p interacting factor 3)-like (From Topology)	T: NIF3 (NGG1p interacting factor 3)-like	F: NIF3_1st	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.1390.30	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
B	3.40.1390.30	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
C	3.40.1390.30	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
D	3.40.1390.30	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
E	3.40.1390.30	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
F	3.40.1390.30	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
G	3.40.1390.30	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
H	3.40.1390.30	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
I	3.40.1390.30	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
J	3.40.1390.30	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
K	3.40.1390.30	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
L	3.40.1390.30	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.