4AQ8 | pdb_00004aq8

CRYSTAL STRUCTURE OF MOUSE CADHERIN-23 EC1-2 AND PROTOCADHERIN-15 EC1- 2 FORM II


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACadherine4aq8A1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CadherinECOD (1.6)
BCadherine4aq8B1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CadherinECOD (1.6)
CEUF07711e4aq8C1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EUF07711ECOD (1.6)
CCadherine4aq8C2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CadherinECOD (1.6)
DEUF07711e4aq8D1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EUF07711ECOD (1.6)
DCadherine4aq8D2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CadherinECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.40.60 Mainly Beta Sandwich Immunoglobulin-like CadherinsCATH (4.3.0)
B2.60.40.60 Mainly Beta Sandwich Immunoglobulin-like CadherinsCATH (4.3.0)
C2.60.40.3430 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
C2.60.40.60 Mainly Beta Sandwich Immunoglobulin-like CadherinsCATH (4.3.0)
D2.60.40.3430 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
D2.60.40.60 Mainly Beta Sandwich Immunoglobulin-like CadherinsCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00028Cadherin domain (Cadherin)Cadherin domainDomain
C, D
PF00028Cadherin domain (Cadherin)Cadherin domainDomain
C, D
PF18432Extracellular Cadherin domain (ECD)Extracellular Cadherin domainThis is an extracellular cadherin (EC) domain which can be found at the N-terminal region of Protocadherin 15 (Pcdh15). Pcdh15 features exceptionally long extracellular domains containing 11 ECs [1]. These repeats are structurally similar, but not id ...This is an extracellular cadherin (EC) domain which can be found at the N-terminal region of Protocadherin 15 (Pcdh15). Pcdh15 features exceptionally long extracellular domains containing 11 ECs [1]. These repeats are structurally similar, but not identical in sequence, often featuring linkers with conserved calcium-binding sites that confer mechanical strength to them [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
CADHERIN-23
C, D
PROTOCADHERIN-15