4B6I | pdb_00004b6i

Crystal structure Rap2b (SMA2266) from Serratia marcescens

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyT6SS immunity proteins-like 8052375 3002110 SCOP2B (2022-06-29)
CSCOP2 FamilyT6SS immunity proteins-like 8046005 4004817 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyT6SS immunity proteins-like 8052375 3002110 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyT6SS immunity proteins-like 8052375 3002110 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyT6SS immunity proteins-like 8052375 3002110 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DTai4_2e4b6iD1 A: alpha bundlesX: Rap2b (SMA2266) (From Topology)H: Rap2b (SMA2266) (From Topology)T: Rap2b (SMA2266)F: Tai4_2ECOD (1.6)
CTai4_2e4b6iC1 A: alpha bundlesX: Rap2b (SMA2266) (From Topology)H: Rap2b (SMA2266) (From Topology)T: Rap2b (SMA2266)F: Tai4_2ECOD (1.6)
BTai4_2e4b6iB1 A: alpha bundlesX: Rap2b (SMA2266) (From Topology)H: Rap2b (SMA2266) (From Topology)T: Rap2b (SMA2266)F: Tai4_2ECOD (1.6)
ATai4_2e4b6iA1 A: alpha bundlesX: Rap2b (SMA2266) (From Topology)H: Rap2b (SMA2266) (From Topology)T: Rap2b (SMA2266)F: Tai4_2ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D1.20.120.1620 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) CATH (4.3.0)
C1.20.120.1620 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) CATH (4.3.0)
B1.20.120.1620 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) CATH (4.3.0)
A1.20.120.1620 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF16695Type VI secretion system (T6SS), amidase immunity protein (Tai4)Type VI secretion system (T6SS), amidase immunity proteinTai4 is a new form of autoimmunity protein for a type VI secretion system, T6SS. T6SS has roles in interspecies interactions, as well as higher order host-infection, by injecting effector proteins into the periplasmic compartment of the recipient cel ...Tai4 is a new form of autoimmunity protein for a type VI secretion system, T6SS. T6SS has roles in interspecies interactions, as well as higher order host-infection, by injecting effector proteins into the periplasmic compartment of the recipient cells of closely related species. Pseudomonas aeruginosa produces at least three effector proteins to other cells and thus has three specific cognate immunity proteins to protect itself. Tae4, or type VI amidase effector 4, in Enterobacter cloacae has a cognate Tai4 or type VI amidase immunity 4 protein [1]. The effector is Tae4, Pfam:PF14113.
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR038314T6SS superfamilyHomologous Superfamily
A, B, C, D
IPR032032Type VI secretion system (T6SS), amidase immunity proteinFamily