4FDG | pdb_00004fdg

Crystal Structure of an Archaeal MCM Filament

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	PHP	e4fdgE2	A: alpha bundles	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: PHP	ECOD (develop294)
E	Molybdop_Fe4S4	e4fdgE4	A: alpha bundles	X: Cytidine deaminase-like	H: KorB C-terminal domain	T: KorB C-terminal domain	F: Molybdop_Fe4S4	ECOD (develop294)
D	PHP	e4fdgD2	A: alpha bundles	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: PHP	ECOD (develop294)
D	Molybdop_Fe4S4	e4fdgD4	A: alpha bundles	X: Cytidine deaminase-like	H: KorB C-terminal domain	T: KorB C-terminal domain	F: Molybdop_Fe4S4	ECOD (develop294)
C	PHP	e4fdgC2	A: alpha bundles	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: PHP	ECOD (develop294)
C	Molybdop_Fe4S4	e4fdgC4	A: alpha bundles	X: Cytidine deaminase-like	H: KorB C-terminal domain	T: KorB C-terminal domain	F: Molybdop_Fe4S4	ECOD (develop294)
B [auth A]	RPA43_OB	e4fdgA2	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: RPA43_OB	ECOD (develop294)
B [auth A]	Molybdop_Fe4S4	e4fdgA4	A: alpha bundles	X: Cytidine deaminase-like	H: KorB C-terminal domain	T: KorB C-terminal domain	F: Molybdop_Fe4S4	ECOD (develop294)
A [auth B]	ABC_tran	e4fdgB1	A: alpha bundles	X: Thioredoxin-like	H: ClpP/crotonase	T: ClpP/crotonase	F: ABC_tran	ECOD (develop294)
A [auth B]	Molybdop_Fe4S4	e4fdgB5	A: alpha bundles	X: Cytidine deaminase-like	H: KorB C-terminal domain	T: KorB C-terminal domain	F: Molybdop_Fe4S4	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A], C, D, E	PF14551	MCM N-terminal domain (MCM_N)	MCM N-terminal domain	This family contains the N-terminal domain of MCM proteins.	Domain
A [auth B], B [auth A], C, D, E	PF00493	MCM P-loop domain (MCM)	MCM P-loop domain		Domain
A [auth B], B [auth A], C, D, E	PF17855	MCM AAA-lid domain (MCM_lid)	MCM AAA-lid domain	This entry represents the AAA-lid domain found in MCM proteins.	Domain
A [auth B], B [auth A], C, D, E	PF17207	MCM OB domain (MCM_OB)	MCM OB domain	This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A], C, D, E	Minichromosome maintenance protein MCM	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity ATP-dependent activity, acting on DNA nucleic acid conformation isomerase activity isomerase activity DNA helicase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid helicase activity macromolecular conformation isomerase activity identical protein binding protein binding DNA binding single-stranded DNA binding nucleic acid binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	protein-containing complex MCM complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A], C, D, E	IPR027925	MCM, N-terminal domain	Domain
A [auth B], B [auth A], C, D, E	IPR031327	Mini-chromosome maintenance protein	Family
A [auth B], B [auth A], C, D, E	IPR048907	MCM, C-terminal domain	Domain
A [auth B], B [auth A], C, D, E	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A [auth B], B [auth A], C, D, E	IPR033762	MCM OB domain	Domain
A [auth B], B [auth A], C, D, E	IPR003593	AAA+ ATPase domain	Domain
A [auth B], B [auth A], C, D, E	IPR001208	MCM domain	Domain
A [auth B], B [auth A], C, D, E	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
A [auth B], B [auth A], C, D, E	IPR041562	MCM, AAA-lid domain	Domain
A [auth B], B [auth A], C, D, E	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.