4NIA | pdb_00004nia

Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
Y [auth G]	d4niag_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
WA [auth M]	d4niam_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
U [auth F]	d4niaf_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
SA [auth L]	d4nial_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
Q [auth E]	d4niae_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
OA [auth K]	d4niak_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
M [auth D]	d4niad_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
KA [auth J]	d4niaj_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
I [auth C]	d4niac_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
GA [auth I]	d4niai_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
EB [auth O]	d4niao_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
E [auth B]	d4niab_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
CA [auth H]	d4niah_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
AB [auth N]	d4nian_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
A	d4niaa_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Y [auth G]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
WA [auth M]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
U [auth F]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
SA [auth L]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
Q [auth E]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
OA [auth K]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
M [auth D]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
KA [auth J]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
I [auth C]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
GA [auth I]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
EB [auth O]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
E [auth B]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
CA [auth H]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
AB [auth N]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Y [auth G]	EUF07641	e4niaG1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
WA [auth M]	EUF07641	e4niaM1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
U [auth F]	EUF07641	e4niaF1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
SA [auth L]	EUF07641	e4niaL1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
Q [auth E]	EUF07641	e4niaE1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
OA [auth K]	EUF07641	e4niaK1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
M [auth D]	EUF07641	e4niaD1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
KA [auth J]	EUF07641	e4niaJ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
I [auth C]	EUF07641	e4niaC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
GA [auth I]	EUF07641	e4niaI1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
EB [auth O]	EUF07641	e4niaO1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
E [auth B]	EUF07641	e4niaB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
CA [auth H]	EUF07641	e4niaH1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
AB [auth N]	EUF07641	e4niaN1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
A	EUF07641	e4niaA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
Y [auth G]	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
WA [auth M]	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
U [auth F]	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
SA [auth L]	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
Q [auth E]	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
OA [auth K]	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
M [auth D]	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
KA [auth J]	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
I [auth C]	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
GA [auth I]	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
EB [auth O]	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
E [auth B]	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
CA [auth H]	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
AB [auth N]	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
A	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
BA [auth z], D [auth t], DB [auth 7], FA [auth 1], H [auth u], BA [auth z], D [auth t], DB [auth 7], FA [auth 1], H [auth u], HB [auth 8], JA [auth 2], L [auth v], NA [auth 3], P [auth w], RA [auth 4], T [auth x], VA [auth 5], X [auth y], ZA [auth 6]	RNA (5'-R(PUPU)-3')	-	-	-
AA [auth k], C [auth e], CB [auth r], EA [auth l], G [auth f], AA [auth k], C [auth e], CB [auth r], EA [auth l], G [auth f], GB [auth s], IA [auth m], K [auth g], MA [auth n], O [auth h], QA [auth o], S [auth i], UA [auth p], W [auth j], YA [auth q]	RNA (5'-R(PUPUPUPUPUPUPUPUPUPU)-3')	-	-	-
B [auth P], BB [auth c], DA [auth W], F [auth Q], FB [auth d], B [auth P], BB [auth c], DA [auth W], F [auth Q], FB [auth d], HA [auth X], J [auth R], LA [auth Y], N [auth S], PA [auth Z], R [auth T], TA [auth a], V [auth U], XA [auth b], Z [auth V]	RNA (5'-R(PAPAPAPAPAPAPAPAPAPA)-3')	-	-	-
A, AB [auth N], CA [auth H], E [auth B], EB [auth O], A, AB [auth N], CA [auth H], E [auth B], EB [auth O], GA [auth I], I [auth C], KA [auth J], M [auth D], OA [auth K], Q [auth E], SA [auth L], U [auth F], WA [auth M], Y [auth G]	Coat protein	structural molecule activity	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AB [auth N], CA [auth H], E [auth B], EB [auth O], A, AB [auth N], CA [auth H], E [auth B], EB [auth O], GA [auth I], I [auth C], KA [auth J], M [auth D], OA [auth K], Q [auth E], SA [auth L], U [auth F], WA [auth M], Y [auth G]	IPR037164	Satellite virus coat domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.