4W9W | pdb_00004w9w

Crystal Structure of BMP-2-inducible kinase in complex with small molecule AZD-7762

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4w9wa_	Alpha and beta proteins (a+b)	Protein kinase-like (PK-like)	Protein kinase-like (PK-like)	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Protein kinases catalytic domain-like	8100597	4003661	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Protein kinase-like (PK-like)	8100598	3000066	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Pkinase	e4w9wA1	A: a/b three-layered sandwiches	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00069	Protein kinase domain (Pkinase)	Protein kinase domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	BMP-2-inducible protein kinase	enzyme regulator activity phosphatase regulator activity molecular function regulator activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding enzyme regulator activity phosphatase regulator activity molecular function regulator activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein-containing complex binding AP-2 adaptor complex binding protein serine kinase activity	cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction cell communication positive regulation of response to stimulus signal transduction positive regulation of cellular process regulation of biological process regulation of signaling cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction cell communication positive regulation of response to stimulus signal transduction positive regulation of cellular process regulation of biological process regulation of signaling cell surface receptor signaling pathway biological regulation Notch signaling pathway regulation of response to stimulus regulation of Notch signaling pathway regulation of cell communication cellular process positive regulation of Notch signaling pathway positive regulation of signaling import into cell regulation of localization regulation of cellular component organization transport regulation of transport regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport establishment of localization vesicle-mediated transport cellular component organization localization clathrin-dependent endocytosis cellular component organization or biogenesis receptor-mediated endocytosis endocytosis regulation of clathrin-dependent endocytosis regulation of endocytosis developmental process multicellular organismal process regulation of multicellular organismal development regulation of developmental process bone mineralization animal organ development regulation of biomineral tissue development regulation of bone mineralization tissue development multicellular organism development ossification anatomical structure development biomineral tissue development regulation of multicellular organismal process regulation of ossification	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR051744	AP2-associated Ser/Thr protein kinase	Family
A	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A	IPR000719	Protein kinase domain	Domain
A	IPR008271	Serine/threonine-protein kinase, active site	Active Site
A	IPR028182	BMP-2-inducible protein kinase, C-terminal	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q9NSY1	Pancreatic Neuroendocrine Tumor primary myelofibrosis Sjogren syndrome ulcerative colitis acute myeloid leukemia breast cancer glioblastoma interstitial cystitis malignant ependymoma non-small cell lung carcinoma ovarian cancer psoriasis squamous cell lung carcinoma astrocytic tumor Crohn disease Pancreatic Neuroendocrine Tumor primary myelofibrosis Sjogren syndrome ulcerative colitis acute myeloid leukemia breast cancer glioblastoma interstitial cystitis malignant ependymoma non-small cell lung carcinoma ovarian cancer psoriasis squamous cell lung carcinoma astrocytic tumor Crohn disease idiopathic pulmonary fibrosis malignant glioma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma renal cell carcinoma subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor gastrointestinal stromal tumor inflammatory bowel disease interstitial lung disease malignant mesothelioma osteosarcoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.