Crystal structure of human MDM2-RPL11
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d4xxbb_ | Small proteins | Rubredoxin-like | Ran binding protein zinc finger-like | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | zf-RanBP | e4xxbB1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: zf-RanBP | ECOD (1.6) |
| A | Ribosomal_L5_C | e4xxbA1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 2.30.30.380 | Mainly Beta | Roll | SH3 type barrels. | Zn-finger domain of Sec23/24 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00641 | Zn-finger in Ran binding protein and others (Zn_ribbon_RanBP) | Zn-finger in Ran binding protein and others | Domain | ||
| PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR003121 | SWIB/MDM2 domain | Domain | |
| IPR016495 | p53 negative regulator Mdm2/Mdm4 | Family | |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
| IPR001876 | Zinc finger, RanBP2-type | Domain | |
| IPR036443 | Zinc finger, RanBP2-type superfamily | Homologous Superfamily | |
| IPR036885 | SWIB/MDM2 domain superfamily | Homologous Superfamily | |
| IPR044080 | MDM2, modified RING finger, HC subclass | Domain | |
| IPR001841 | Zinc finger, RING-type | Domain | |
| IPR028340 | E3 ubiquitin-protein ligase Mdm2 | Family | |
| IPR020929 | Large ribosomal subunit protein uL5, conserved site | Conserved Site | |
| IPR031309 | Large ribosomal subunit protein uL5, C-terminal | Domain | |
| IPR022803 | Large ribosomal subunit protein uL5 domain superfamily | Homologous Superfamily | |
| IPR031310 | Large ribosomal subunit protein uL5, N-terminal | Domain | |
| IPR002132 | Large ribosomal subunit protein uL5 | Family |














