5BKL | pdb_00005bkl

Crystallographic structure of the cubic crystal form of STMV (77.9 degree rotation) grown from NaCl

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
O	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
FA [auth KK]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
EA [auth JJ]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
DA [auth II]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
CA [auth HH]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
BA [auth GG]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
O	EUF07641	e5bklO1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
N	EUF07641	e5bklN1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
M	EUF07641	e5bklM1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
L	EUF07641	e5bklL1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
K	EUF07641	e5bklK1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
J	EUF07641	e5bklJ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
I	EUF07641	e5bklI1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
H	EUF07641	e5bklH1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
G	EUF07641	e5bklG1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
FA [auth KK]	EUF07641	e5bklKK1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
F	EUF07641	e5bklF1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
EA [auth JJ]	EUF07641	e5bklJJ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
E	EUF07641	e5bklE1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
DA [auth II]	EUF07641	e5bklII1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
D	EUF07641	e5bklD1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
CA [auth HH]	EUF07641	e5bklHH1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
C	EUF07641	e5bklC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
BA [auth GG]	EUF07641	e5bklGG1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
B	EUF07641	e5bklB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
A	EUF07641	e5bklA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
Z [auth m]	RNA (5'-R(UPUPUPUPUPUPUPUPUPUPU)-3')	-	-	-
AA [auth n], IA [auth WW], KA [auth kk], LA [auth ll], MA [auth qq], AA [auth n], IA [auth WW], KA [auth kk], LA [auth ll], MA [auth qq], W [auth e], X [auth h], Y [auth i]	RNA (5'-R(UPUPUPUPUPUPUPUPUPUPUPUP*U)-3')	-	-	-
GA [auth TT], U [auth Y], V [auth a]	RNA (5'-R(APAPAPAPAPAPAPAPAPAP*A)-3')	-	-	-
HA [auth UU], JA [auth bb], P, Q [auth S], R [auth T], HA [auth UU], JA [auth bb], P, Q [auth S], R [auth T], S [auth V], T [auth X]	RNA (5'-R(APAPAPAPAPAPAPAPAPAPAPA)-3')	-	-	-
A, B, BA [auth GG], C, CA [auth HH], A, B, BA [auth GG], C, CA [auth HH], D, DA [auth II], E, EA [auth JJ], F, FA [auth KK], G, H, I, J, K, L, M, N, O	Coat protein	structural molecule activity	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, BA [auth GG], C, CA [auth HH], A, B, BA [auth GG], C, CA [auth HH], D, DA [auth II], E, EA [auth JJ], F, FA [auth KK], G, H, I, J, K, L, M, N, O	IPR037164	Satellite virus coat domain superfamily	Homologous Superfamily