5C6F | pdb_00005c6f

Crystal structures of ferritin mutants reveal side-on binding to diiron and end-on cleavage of oxygen

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d5c6fl1	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
L	d5c6fl2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
K	d5c6fk1	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
K	d5c6fk2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
J	d5c6fj1	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
J	d5c6fj2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
I	d5c6fi1	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
I	d5c6fi2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
H	d5c6fh1	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
H	d5c6fh2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
G	d5c6fg1	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
G	d5c6fg2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
F	d5c6ff1	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
F	d5c6ff2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
E	d5c6fe1	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
E	d5c6fe2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
D	d5c6fd1	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
D	d5c6fd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
C	d5c6fc1	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
C	d5c6fc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
B	d5c6fb1	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
B	d5c6fb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
A	d5c6fa1	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
A	d5c6fa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Ferritin-like	8063900	3001658	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ferritin-like	8063900	3001658	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ferritin-like	8063900	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8063900	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8063900	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8063900	3001658	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8063900	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8063900	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8063900	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8063900	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8063900	3001658	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ferritin-like	8063900	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Ferritin	e5c6fL1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
K	Ferritin	e5c6fK1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
J	Ferritin	e5c6fJ1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
I	Ferritin	e5c6fI1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
H	Ferritin	e5c6fH1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
G	Ferritin	e5c6fG1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
F	Ferritin	e5c6fF1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
E	Ferritin	e5c6fE1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
D	Ferritin	e5c6fD1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
C	Ferritin	e5c6fC1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
B	Ferritin	e5c6fB1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
A	Ferritin	e5c6fA1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
K	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
J	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
I	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
H	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
G	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
F	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
E	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF00210	Ferritin-like domain (Ferritin)	Ferritin-like domain	This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Bacterial non-heme ferritin	cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding ferric iron binding oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding ferric iron binding oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity identical protein binding protein binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009040	Ferritin-like diiron domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR041719	Ferritin, prokaryotic-type	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR008331	Ferritin/DPS domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR001519	Ferritin	Family