5HDT | pdb_00005hdt

Human cohesin regulator Pds5B bound to a Wapl peptide

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	CLASP_N_2	e5hdtB1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: CLASP_N_2	ECOD (1.6)
A	CLASP_N_2	e5hdtA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: CLASP_N_2	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF20168	Sister chromatid cohesion protein PDS5 protein (PDS5)	Sister chromatid cohesion protein PDS5 protein	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth E]	Wings apart-like protein homolog	ATP-dependent activity, acting on DNA catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid ATP-dependent protein-DNA unloader activity catalytic activity ATP-dependent activity	cellular process cell division negative regulation of chromatin binding regulation of molecular function negative regulation of binding regulation of binding biological regulation negative regulation of molecular function localization protein localization to chromatin protein localization to chromosome protein localization to organelle macromolecule localization intracellular protein localization cellular process cell division negative regulation of chromatin binding regulation of molecular function negative regulation of binding regulation of binding biological regulation negative regulation of molecular function localization protein localization to chromatin protein localization to chromosome protein localization to organelle macromolecule localization intracellular protein localization mitotic nuclear division organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process mitotic sister chromatid segregation nuclear chromosome segregation cellular component organization or biogenesis cell cycle chromosome segregation cell cycle process regulation of cellular process negative regulation of biological process regulation of primary metabolic process nucleobase-containing compound metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process regulation of biological process negative regulation of DNA replication negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process DNA metabolic process nucleic acid metabolic process DNA replication negative regulation of DNA metabolic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process regulation of DNA replication regulation of cellular component organization negative regulation of cell cycle negative regulation of sister chromatid cohesion negative regulation of chromosome organization regulation of cell cycle negative regulation of cellular component organization regulation of cell cycle process sister chromatid cohesion regulation of chromosome organization negative regulation of cell cycle process regulation of organelle organization negative regulation of organelle organization regulation of sister chromatid cohesion	intercellular bridge cellular anatomical structure intracellular organelle intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome cytoplasm cytosol membrane-bounded organelle intracellular membrane-bounded organelle chromosome, centromeric region chromosomal region intercellular bridge cellular anatomical structure intracellular organelle intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome cytoplasm cytosol membrane-bounded organelle intracellular membrane-bounded organelle chromosome, centromeric region chromosomal region mitotic spindle cytoskeleton spindle microtubule cytoskeleton nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen chromatin
A, B	Sister chromatid cohesion protein PDS5 homolog B	DNA binding binding nucleic acid binding	cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair negative regulation of cell population proliferation cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair negative regulation of cell population proliferation regulation of biological process cell population proliferation regulation of cellular process regulation of cell population proliferation negative regulation of cellular process biological regulation negative regulation of biological process cell division cellular component organization organelle organization mitotic sister chromatid cohesion chromosome organization sister chromatid cohesion cellular component organization or biogenesis cell cycle cell cycle process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome cytoplasm cytosol chromosome, centromeric region chromosomal region membrane-bounded organelle nucleus membrane-enclosed lumen intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome cytoplasm cytosol chromosome, centromeric region chromosomal region membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen chromatin

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth E]	IPR039874	Wings apart-like protein	Family
C [auth E]	IPR016024	Armadillo-type fold	Homologous Superfamily
C [auth E]	IPR011989	Armadillo-like helical	Homologous Superfamily
C [auth E]	IPR022771	Wings apart-like protein, C-terminal	Domain
C [auth E]	IPR012502	WAPL domain	Domain
A, B	IPR016024	Armadillo-type fold	Homologous Superfamily
A, B	IPR011989	Armadillo-like helical	Homologous Superfamily
A, B	IPR039776	Sister chromatid cohesion protein Pds5	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth E]	Pharos: Q7Z5K2	breast cancer malignant mesothelioma psoriasis large cell medulloblastoma myopathy lymphoplasmacytic lymphoma ovarian cancer
A, B	Pharos: Q9NTI5	psoriasis astrocytic tumor glioblastoma large cell medulloblastoma malignant ependymoma medulloblastoma ovarian cancer pituitary cancer squamous cell lung carcinoma atypical teratoid rhabdoid tumor heart disease lung adenocarcinoma malignant glioma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma psoriasis astrocytic tumor glioblastoma large cell medulloblastoma malignant ependymoma medulloblastoma ovarian cancer pituitary cancer squamous cell lung carcinoma atypical teratoid rhabdoid tumor heart disease lung adenocarcinoma malignant glioma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor subependymal giant cell astrocytoma breast cancer invasive ductal breast carcinoma lung carcinoma malignant mesothelioma osteosarcoma pilocytic astrocytoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.