5L24 | pdb_00005l24

Structure of CNTnw N149L in the intermediate 2 state

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Nucleoside permease-like	8088907	3002214	SCOP2B (2022-06-29)
B [auth C]	SCOP2 Family	NupC-like	8088906	4006669	SCOP2 (2022-06-29)
B [auth C]	SCOP2 Superfamily	Nucleoside permease-like	8088907	3002214	SCOP2 (2022-06-29)
C [auth B]	SCOP2B Superfamily	Nucleoside permease-like	8088907	3002214	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Nucleos_tra2_C	e5l24A1	A: alpha complex topology	X: Concentrative nucleoside transporter (From Topology)	H: Concentrative nucleoside transporter (From Topology)	T: Concentrative nucleoside transporter	F: Nucleos_tra2_C	ECOD (1.6)
B [auth C]	Nucleos_tra2_C	e5l24C1	A: alpha complex topology	X: Concentrative nucleoside transporter (From Topology)	H: Concentrative nucleoside transporter (From Topology)	T: Concentrative nucleoside transporter	F: Nucleos_tra2_C	ECOD (1.6)
C [auth B]	Nucleos_tra2_C	e5l24B1	A: alpha complex topology	X: Concentrative nucleoside transporter (From Topology)	H: Concentrative nucleoside transporter (From Topology)	T: Concentrative nucleoside transporter	F: Nucleos_tra2_C	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C], C [auth B]	PF07670	Nucleoside recognition (Gate)	Nucleoside recognition	This region in the nucleoside transporter proteins are responsible for determining nucleoside specificity in the human CNT1 and CNT2 proteins (e.g Swiss:O00337) [1]. In the FeoB proteins (e.g. Swiss:O25396), which are believed to be Fe2+ transporter ...	This region in the nucleoside transporter proteins are responsible for determining nucleoside specificity in the human CNT1 and CNT2 proteins (e.g Swiss:O00337) [1]. In the FeoB proteins (e.g. Swiss:O25396), which are believed to be Fe2+ transporters, it includes the membrane pore region, so the function of this region is likely to be more general than just nucleoside specificity [2]. This family may represent the pore and gate, with a wide potential range of specificity. Hence its name 'Gate'.	Domain
A, B [auth C], C [auth B]	PF07662	Na+ dependent nucleoside transporter C-terminus (Nucleos_tra2_C)	Na+ dependent nucleoside transporter C-terminus	-	Family
A, B [auth C], C [auth B]	PF01773	Na+ dependent nucleoside transporter N-terminus (Nucleos_tra2_N)	Na+ dependent nucleoside transporter N-terminus	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C], C [auth B]	Nucleoside permease	active transmembrane transporter activity transporter activity symporter activity transmembrane transporter activity secondary active transmembrane transporter activity carbohydrate derivative transmembrane transporter activity nucleoside transmembrane transporter activity nucleobase-containing compound transmembrane transporter activity	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C], C [auth B]	IPR018270	Concentrative nucleoside transporter, metazoan/bacterial	Family
A, B [auth C], C [auth B]	IPR008276	Concentrative nucleoside transporter	Family
A, B [auth C], C [auth B]	IPR002668	Concentrative nucleoside transporter N-terminal domain	Domain
A, B [auth C], C [auth B]	IPR011657	Concentrative nucleoside transporter C-terminal domain	Domain
A, B [auth C], C [auth B]	IPR011642	Nucleoside transporter/FeoB GTPase, Gate domain	Domain

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B [auth C], C [auth B]	OPM	Transmembrane	Alpha-helical polytopic	Concentrative nucleoside transporter	Concentrative nucleoside transporter

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B [auth C], C [auth B]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B [auth C], C [auth B]	MemProtMD	Annotated as membrane protein by MemProtMD

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.