5O1U | pdb_00005o1u

Structure of wildtype T.maritima PDE (TM1595) with AMP and Mn2+


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APeptidase_S26e5o1uA1 A: alpha bundlesX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: Peptidase_S26ECOD (develop294)
BPeptidase_S26e5o1uB1 A: alpha bundlesX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: Peptidase_S26ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF02272DHHA1 domain (DHHA1)DHHA1 domainThis domain is often found adjacent to the DHH domain Pfam:PF01368 and is called DHHA1 for DHH associated domain. This domain is diagnostic of DHH subfamily 1 members [1]. This domain is also found in alanyl tRNA synthetase e.g. Swiss:P00957, suggest ...This domain is often found adjacent to the DHH domain Pfam:PF01368 and is called DHHA1 for DHH associated domain. This domain is diagnostic of DHH subfamily 1 members [1]. This domain is also found in alanyl tRNA synthetase e.g. Swiss:P00957, suggesting that this domain may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.
Domain
A, B
PF01368DHH family, N-terminal domain (DHH)DHH family, N-terminal domainIt is predicted that this family of proteins all perform a phosphoesterase function. This domain is found at the N-terminal of the single stranded DNA exonuclease RecJ. It shows an alpha-beta configuration [2]. Domain