5UJ7 | pdb_00005uj7

Structure of the active form of human Origin Recognition Complex ATPase motor module, complex subunitS 1, 4, 5

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth B]	Cdc6_C	e5uj7B2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Cdc6_C	ECOD (1.6)
D [auth B]	KOG1514_1st	e5uj7B1	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: KOG1514_1st	ECOD (1.6)
D [auth B]	AAA	e5uj7B3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
A	Cdc6_C	e5uj7A3	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Cdc6_C	ECOD (1.6)
A	KOG1514_1st	e5uj7A1	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: KOG1514_1st	ECOD (1.6)
A	AAA	e5uj7A2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
E [auth D]	ORC4_C_C	e5uj7D2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: ORC4_C_C	ECOD (1.6)
E [auth D]	ORC4_C_N	e5uj7D3	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: ORC4_C_N	ECOD (1.6)
E [auth D]	AAA	e5uj7D1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
B [auth C]	ORC4_C_C	e5uj7C1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: ORC4_C_C	ECOD (1.6)
B [auth C]	ORC4_C_N	e5uj7C3	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: ORC4_C_N	ECOD (1.6)
B [auth C]	AAA	e5uj7C2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
F	AAA	e5uj7F1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
C [auth E]	AAA	e5uj7E1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E [auth D]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
B [auth C]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D [auth B]	PF17872	AAA lid domain (AAA_lid_10)	AAA lid domain	This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.	Domain
A, D [auth B]	PF09079	CDC6, C terminal winged helix domain (WHD_Cdc6)	CDC6, C terminal winged helix domain	The C terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, how ...	The C terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity [1].	Domain
A, D [auth B]	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain
B [auth C], E [auth D]	PF13191	AAA ATPase domain (AAA_16)	AAA ATPase domain	This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	Domain
B [auth C], E [auth D]	PF14629	Origin recognition complex (ORC) subunit 4 C-terminus (ORC4_C)	Origin recognition complex (ORC) subunit 4 C-terminus	-	Family
C [auth E], F	PF21639	ORC5, lid domain (ORC5_lid)	ORC5, lid domain	ORC5 is a component of the origin recognition complex (ORC) that binds origins of replication. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. This is the lid domain, which with the N-terminal RecA-fold ...	ORC5 is a component of the origin recognition complex (ORC) that binds origins of replication. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. This is the lid domain, which with the N-terminal RecA-fold domain, constitutes the well-known AAA+ domain [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D [auth B]	Origin recognition complex subunit 1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding DNA replication origin binding chromatin binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity cation binding metal ion binding	cellular response to stimulus regulation of cellular process regulation of cell cycle phase transition response to stimulus signaling G2/M transition of mitotic cell cycle negative regulation of biological process negative regulation of cell cycle cell cycle phase transition intracellular signal transduction mitotic cell cycle negative regulation of mitotic cell cycle cell communication mitotic G2/M transition checkpoint regulation of mitotic cell cycle cellular response to stimulus regulation of cellular process regulation of cell cycle phase transition response to stimulus signaling G2/M transition of mitotic cell cycle negative regulation of biological process negative regulation of cell cycle cell cycle phase transition intracellular signal transduction mitotic cell cycle negative regulation of mitotic cell cycle cell communication mitotic G2/M transition checkpoint regulation of mitotic cell cycle mitotic DNA integrity checkpoint signaling negative regulation of cellular process negative regulation of cell cycle phase transition signal transduction cell cycle DNA replication checkpoint signaling regulation of cell cycle cell cycle process cell cycle G2/M phase transition regulation of biological process mitotic DNA replication checkpoint signaling negative regulation of mitotic cell cycle phase transition regulation of G2/M transition of mitotic cell cycle regulation of cell cycle process biological regulation DNA integrity checkpoint signaling regulation of cell cycle G2/M phase transition negative regulation of cell cycle process cell cycle checkpoint signaling regulation of mitotic cell cycle phase transition mitotic cell cycle checkpoint signaling mitotic cell cycle process negative regulation of cell cycle G2/M phase transition cellular process negative regulation of G2/M transition of mitotic cell cycle mitotic cell cycle phase transition nucleobase-containing compound metabolic process DNA-templated DNA replication DNA replication DNA replication initiation metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure origin recognition complex organelle membraneless organelle intracellular membraneless organelle chromosome cytoplasm cytosol chromosome, telomeric region chromosomal region membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure origin recognition complex organelle membraneless organelle intracellular membraneless organelle chromosome cytoplasm cytosol chromosome, telomeric region chromosomal region membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen nuclear origin of replication recognition complex nuclear protein-containing complex nuclear chromosome
B [auth C], E [auth D]	Origin recognition complex subunit 4	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding nucleic acid binding DNA replication origin binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	cellular component organization cellular component biogenesis protein polymerization cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis nucleobase-containing compound metabolic process DNA-templated DNA replication DNA replication DNA replication initiation metabolic process primary metabolic process cellular component organization cellular component biogenesis protein polymerization cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis nucleobase-containing compound metabolic process DNA-templated DNA replication DNA replication DNA replication initiation metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process sexual reproduction cytoskeleton-dependent cytokinesis reproductive process organelle fission meiotic cell cycle multicellular organismal reproductive process cytokinesis female gamete generation meiotic cell cycle process meiotic cytokinesis gamete generation nuclear division organelle organization female meiotic nuclear division polar body extrusion after meiotic divisions meiotic nuclear division cell cycle cell division cell cycle process	intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure origin recognition complex organelle membraneless organelle intracellular membraneless organelle chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle nucleolus intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure origin recognition complex organelle membraneless organelle intracellular membraneless organelle chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle nucleolus intracellular organelle lumen organelle lumen nuclear lumen cytoplasm cytosol chromosome, telomeric region chromosomal region nucleoplasm nuclear origin of replication recognition complex nuclear protein-containing complex nuclear chromosome
C [auth E], F	Origin recognition complex subunit 5	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding nucleic acid binding DNA replication origin binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process DNA-templated DNA replication DNA replication initiation regulation of biological process regulation of cellular process biological regulation regulation of macromolecule metabolic process nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process DNA-templated DNA replication DNA replication initiation regulation of biological process regulation of cellular process biological regulation regulation of macromolecule metabolic process regulation of primary metabolic process regulation of nucleobase-containing compound metabolic process regulation of metabolic process regulation of DNA replication regulation of DNA metabolic process	intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure origin recognition complex organelle membraneless organelle intracellular membraneless organelle chromosome cytoplasm cytosol chromosome, telomeric region chromosomal region membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure origin recognition complex organelle membraneless organelle intracellular membraneless organelle chromosome cytoplasm cytosol chromosome, telomeric region chromosomal region membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen chromatin nuclear origin of replication recognition complex nuclear protein-containing complex nuclear chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D [auth B]	IPR041083	AAA lid domain	Domain
A, D [auth B]	IPR043151	Bromo adjacent homology (BAH) domain superfamily	Homologous Superfamily
A, D [auth B]	IPR001025	Bromo adjacent homology (BAH) domain	Domain
A, D [auth B]	IPR015163	Cdc6, C-terminal	Domain
A, D [auth B]	IPR003593	AAA+ ATPase domain	Domain
A, D [auth B]	IPR003959	ATPase, AAA-type, core	Domain
A, D [auth B]	IPR050311	Origin recognition complex 1/Cell division control protein 6	Family
A, D [auth B]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B [auth C], E [auth D]	IPR041664	Orc1-like, AAA ATPase domain	Domain
B [auth C], E [auth D]	IPR032705	Origin recognition complex subunit 4, C-terminal	Domain
B [auth C], E [auth D]	IPR003593	AAA+ ATPase domain	Domain
B [auth C], E [auth D]	IPR016527	Origin recognition complex subunit 4	Family
B [auth C], E [auth D]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
C [auth E], F	IPR048866	ORC5, lid domain	Domain
C [auth E], F	IPR047088	Origin recognition complex subunit 5, C-terminal	Domain
C [auth E], F	IPR041664	Orc1-like, AAA ATPase domain	Domain
C [auth E], F	IPR020796	Origin recognition complex, subunit 5	Family
C [auth E], F	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, D [auth B]	Pharos: Q13415	Meier-Gorlin syndrome microcephaly Dwarfism Meier-Gorlin syndrome 1 psoriasis atypical teratoid rhabdoid tumor fetal growth restriction hepatocellular carcinoma malignant glioma microlissencephaly intellectual disability malignant mesothelioma non-small cell lung carcinoma primitive neuroectodermal tumor glioblastoma Meier-Gorlin syndrome microcephaly Dwarfism Meier-Gorlin syndrome 1 psoriasis atypical teratoid rhabdoid tumor fetal growth restriction hepatocellular carcinoma malignant glioma microlissencephaly intellectual disability malignant mesothelioma non-small cell lung carcinoma primitive neuroectodermal tumor glioblastoma large cell medulloblastoma medulloblastoma osteosarcoma
B [auth C], E [auth D]	Pharos: O43929	Meier-Gorlin syndrome Meier-Gorlin syndrome 2 atrial fibrillation lung cancer microcephaly psoriasis EAR, PATELLA, SHORT STATURE SYNDROME osteosarcoma intellectual disability
C [auth E], F	Pharos: O43913	adrenal cortex carcinoma medulloblastoma Pick disease tuberculosis dermatomyositis non-small cell lung carcinoma plasma cell myeloma lung cancer ovarian cancer psoriasis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.