5WEO | pdb_00005weo

Activated GluA2 complex bound to glutamate, cyclothiazide, and STZ in digitonin

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DPMP22_Claudine5weoD3 A: alpha bundlesX: Bromodomain-likeH: Claudin (From Topology)T: ClaudinF: PMP22_ClaudinECOD (1.6)
DLig_chane5weoD2 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: Lig_chanECOD (1.6)
DANF_receptor_2nd,ANF_receptor_1ste5weoD1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_2nd,ANF_receptor_1stECOD (1.6)
DANF_receptor_1ste5weoD5 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_1stECOD (1.6)
DSBP_bac_3_1ste5weoD4 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_3_1stECOD (1.6)
CPMP22_Claudine5weoC2 A: alpha bundlesX: Bromodomain-likeH: Claudin (From Topology)T: ClaudinF: PMP22_ClaudinECOD (1.6)
CLig_chane5weoC5 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: Lig_chanECOD (1.6)
CANF_receptor_2nd,ANF_receptor_1ste5weoC4 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_2nd,ANF_receptor_1stECOD (1.6)
CANF_receptor_1ste5weoC1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_1stECOD (1.6)
CSBP_bac_3_1ste5weoC3 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_3_1stECOD (1.6)
BPMP22_Claudine5weoB1 A: alpha bundlesX: Bromodomain-likeH: Claudin (From Topology)T: ClaudinF: PMP22_ClaudinECOD (1.6)
BLig_chane5weoB2 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: Lig_chanECOD (1.6)
BANF_receptor_2nd,ANF_receptor_1ste5weoB3 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_2nd,ANF_receptor_1stECOD (1.6)
BANF_receptor_1ste5weoB4 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_1stECOD (1.6)
BSBP_bac_3_1ste5weoB5 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_3_1stECOD (1.6)
APMP22_Claudine5weoA4 A: alpha bundlesX: Bromodomain-likeH: Claudin (From Topology)T: ClaudinF: PMP22_ClaudinECOD (1.6)
ALig_chane5weoA5 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: Lig_chanECOD (1.6)
AANF_receptor_2nd,ANF_receptor_1ste5weoA3 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_2nd,ANF_receptor_1stECOD (1.6)
AANF_receptor_1ste5weoA2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_1stECOD (1.6)
ASBP_bac_3_1ste5weoA1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_3_1stECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF00822PMP-22/EMP/MP20/Claudin family (PMP22_Claudin)PMP-22/EMP/MP20/Claudin family- Family
A, B, C, D
PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
A, B, C, D
PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain
A, B, C, D
PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit chimera

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR051072Voltage-dependent calcium channel gamma subunitFamily
A, B, C, D
IPR004031PMP-22/EMP/MP20/ClaudinFamily
A, B, C, D
IPR005422Voltage-dependent calcium channel, gamma-2 subunitFamily
A, B, C, D
IPR008368Voltage-dependent calcium channel, gamma subunitFamily
A, B, C, D
IPR028082Periplasmic binding protein-like IHomologous Superfamily
A, B, C, D
IPR001508Ionotropic glutamate receptor, metazoaFamily
A, B, C, D
IPR001828Receptor, ligand binding regionDomain
A, B, C, D
IPR001320Ionotropic glutamate receptor, C-terminalDomain
A, B, C, D
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A, B, C, D
IPR015683Ionotropic glutamate receptorFamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C, D
OPMTransmembraneAlpha-helical polytopicIon channel (VIC) superfamilyGlutamate-gated Ion Channel (GIC) family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C, D
MemProtMDAnnotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
A, B, C, D
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALChannels: Other Ion ChannelsGluA2 Glutamate receptor (AMPA-subtype) bound to antagonist ZK and GSG1L in digitonin, state 1