5XPD | pdb_00005xpd

Sugar transporter of AtSWEET13 in inward-facing state with a substrate analog

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	SWEET transporter-like	8085990	4007193	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PQ loop repeat-like	8090952	3002472	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PQ loop repeat-like	8090951	3002472	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MtN3_slv	e5xpdA1	A: alpha duplicates or obligate multimers	X: TOG superfamily	H: SWEET transporter (From Topology)	T: SWEET transporter	F: MtN3_slv	ECOD (1.6)
A	Rubredoxin	e5xpdA3	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Rubredoxin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.20.28.10	Mainly Beta	Single Sheet	Rubrerythrin, domain 2		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF03083	Sugar efflux transporter for intercellular exchange (MtN3_slv)	Sugar efflux transporter for intercellular exchange	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	sugar transporter	sugar transmembrane transporter activity transporter activity carbohydrate transmembrane transporter activity transmembrane transporter activity disaccharide transmembrane transporter activity oligosaccharide transmembrane transporter activity sucrose transmembrane transporter activity lipid transporter activity gibberellin transmembrane transporter activity lipid transmembrane transporter activity carboxylic acid transmembrane transporter activity	cell wall modification cell wall organization or biogenesis cell wall organization callose deposition in cell wall cellular component organization polysaccharide localization localization cell wall thickening callose localization macromolecule localization cellular process cellular component organization or biogenesis external encapsulating structure organization developmental process cell wall modification cell wall organization or biogenesis cell wall organization callose deposition in cell wall cellular component organization polysaccharide localization localization cell wall thickening callose localization macromolecule localization cellular process cellular component organization or biogenesis external encapsulating structure organization developmental process multicellular organismal process reproductive system development developmental growth reproductive process growth developmental process involved in reproduction multicellular organism development fruit development seed development seed growth anatomical structure development reproductive structure development post-embryonic development system development reproductive shoot system development anther development phyllome development androecium development plant organ development floral whorl development dehiscence stamen development multicellular organismal reproductive process flower development shoot system development anther dehiscence floral organ development gametophyte development pollen development organic anion transport gibberellic acid transmembrane transport carboxylic acid transmembrane transport carboxylic acid transport transport lipid localization lipid transport establishment of localization terpenoid transport transmembrane transport organic acid transport isoprenoid transport carbohydrate transport oligosaccharide transport disaccharide transport sucrose transport	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR004316	Sugar transporter SWEET repeat	Repeat
A	IPR047664	Sugar transporter SWEET	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Alpha-helical polytopic	PQ-loop transporters	Eukaryotic SWEET transporters

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A	MemProtMD	Annotated as membrane protein by MemProtMD

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.