6F49 | pdb_00006f49

Periplasmic domain of LolC lacking the Hook.

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MacB_PCD_1	e6f49A2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: MacB_PCD_1	ECOD (1.6)
A	lolCE	e6f49A1	A: a+b two layers	X: Alpha-beta plaits	H: ferredoxin-like domain in periplasmic region of MacB (From Topology)	T: ferredoxin-like domain in periplasmic region of MacB	F: lolCE	ECOD (1.6)
B	MacB_PCD_1	e6f49B2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: MacB_PCD_1	ECOD (1.6)
B	lolCE	e6f49B1	A: a+b two layers	X: Alpha-beta plaits	H: ferredoxin-like domain in periplasmic region of MacB (From Topology)	T: ferredoxin-like domain in periplasmic region of MacB	F: lolCE	ECOD (1.6)
C	MacB_PCD_1	e6f49C2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: MacB_PCD_1	ECOD (1.6)
C	lolCE	e6f49C1	A: a+b two layers	X: Alpha-beta plaits	H: ferredoxin-like domain in periplasmic region of MacB (From Topology)	T: ferredoxin-like domain in periplasmic region of MacB	F: lolCE	ECOD (1.6)
D	MacB_PCD_1	e6f49D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: MacB_PCD_1	ECOD (1.6)
D	lolCE	e6f49D2	A: a+b two layers	X: Alpha-beta plaits	H: ferredoxin-like domain in periplasmic region of MacB (From Topology)	T: ferredoxin-like domain in periplasmic region of MacB	F: lolCE	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF12704	MacB-like periplasmic core domain (MacB_PCD)	MacB-like periplasmic core domain	This family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein [1]. Some structural similarity was found to the periplasmic domain of the AcrB multidrug eff ...	This family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein [1]. Some structural similarity was found to the periplasmic domain of the AcrB multidrug efflux transporter.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Lipoprotein-releasing system transmembrane protein LolC,Lipoprotein-releasing system transmembrane protein LolC	protein transporter activity lipoprotein releasing activity transporter activity	localization establishment of protein localization nitrogen compound transport protein transport transport macromolecule localization lipoprotein transport intracellular protein localization lipoprotein localization establishment of localization protein localization to cell periphery cellular localization protein localization to outer membrane cellular process localization establishment of protein localization nitrogen compound transport protein transport transport macromolecule localization lipoprotein transport intracellular protein localization lipoprotein localization establishment of localization protein localization to cell periphery cellular localization protein localization to outer membrane cellular process localization within membrane protein localization to membrane lipoprotein localization to outer membrane lipoprotein localization to membrane	ATPase dependent transmembrane transport complex protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex transporter complex ATP-binding cassette (ABC) transporter complex cell periphery cellular anatomical structure transmembrane transporter complex outer membrane-bounded periplasmic space cell envelope periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR051447	Lipoprotein-releasing system transmembrane protein	Family
A, B, C, D	IPR003838	ABC3 transporter permease, C-terminal	Domain
A, B, C, D	IPR025857	MacB-like periplasmic core domain	Domain
A, B, C, D	IPR011925	Lipoprotein-releasing system transmembrane protein LolC/E	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.