6G4S | pdb_00006g4s

Cryo-EM structure of a late human pre-40S ribosomal subunit - State B


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth e]SCOP2B SuperfamilyRibosomal protein S30e-like 8053453 3002190 SCOP2B (2022-06-29)
H [auth E]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052755 3001473 SCOP2B (2022-06-29)
H [auth E]SCOP2B SuperfamilyNucleic acid-binding proteins 8052756 3000135 SCOP2B (2022-06-29)
H [auth E]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052757 3000334 SCOP2B (2022-06-29)
G [auth c]SCOP2B SuperfamilyNucleic acid-binding proteins 8063426 3000135 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyRibosomal S3Ae-like 8053212 3002166 SCOP2B (2022-06-29)
EA [auth I]SCOP2B Superfamily50S Ribosomal protein L14-like 8053077 3000433 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8052791 3001397 SCOP2B (2022-06-29)
CA [auth L]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052715 3002138 SCOP2B (2022-06-29)
CA [auth L]SCOP2B SuperfamilyNucleic acid-binding proteins 8052717 3000135 SCOP2B (2022-06-29)
BA [auth N]SCOP2B SuperfamilyHomeodomain-like 8052958 3000001 SCOP2B (2022-06-29)
BA [auth N]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052959 3001284 SCOP2B (2022-06-29)
AA [auth O]SCOP2B SuperfamilyTranslational machinery components 8098844 3000571 SCOP2B (2022-06-29)
Y [auth Q]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082685 3000100 SCOP2B (2022-06-29)
X [auth S]SCOP2B SuperfamilyS13-like H2TH domain 8101555 3000053 SCOP2B (2022-06-29)
W [auth T]SCOP2B SuperfamilyWinged helix DNA-binding domain 8089318 3000034 SCOP2B (2022-06-29)
T [auth V]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8053139 3000068 SCOP2B (2022-06-29)
S [auth W]SCOP2B SuperfamilyRibosomal protein S8 8095469 3000709 SCOP2B (2022-06-29)
M [auth Z]SCOP2B SuperfamilyWinged helix DNA-binding domain 8090992 3000034 SCOP2B (2022-06-29)
L [auth G]SCOP2B SuperfamilyGS N-terminal domain-like 8053171 3000408 SCOP2B (2022-06-29)
J [auth F]SCOP2B SuperfamilyRibosomal protein S7 8066003 3000799 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth e]Ribosomal_S30e6g4se1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
H [auth E]Ribosomal_S4ee6g4sE3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
H [auth E]40S_S4_Ce6g4sE1 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
H [auth E]RS4NTe6g4sE2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
G [auth c]Ribosomal_S28ee6g4sc1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
F [auth C]Ribosomal_S5_C_1e6g4sC1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
F [auth C]Ribosomal_S5_3e6g4sC3 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
F [auth C]Ribosomal_S5_2e6g4sC2 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
E [auth B]Ribosomal_S3Ae_Ne6g4sB1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
E [auth B]Ribosomal_S3Ae_Ce6g4sB2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
D [auth b]Ribosomal_S27ee6g4sb1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
EA [auth I]Ribosomal_S8ee6g4sI1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
DA [auth J]S4e6g4sJ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
C [auth A]Ribosomal_S2_2e6g4sA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
CA [auth L]Ribosomal_S17_1e6g4sL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
BA [auth N]Ribosomal_S13_Ne6g4sN2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
BA [auth N]Ribosomal_S15_2e6g4sN1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
AA [auth O]Ribosomal_S11e6g4sO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
Z [auth P]Ribosomal_S19e6g4sP1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
Y [auth Q]Ribosomal_S9e6g4sQ1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
X [auth S]Ribosomal_S13e6g4sS1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
W [auth T]Ribosomal_S19ee6g4sT1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
T [auth V]Ribosomal_S21ee6g4sV1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
B [auth R]Ribosomal_S17ee6g4sR1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
S [auth W]Ribosomal_S8_N_1e6g4sW2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
S [auth W]Ribosomal_S8_C_1e6g4sW1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
R [auth w]Bystine6g4sw1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: BystinECOD (1.6)
Q [auth X]Ribosom_S12_S23e6g4sX1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
P [auth x]KH_1e6g4sx1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: KH_1ECOD (1.6)
P [auth x]KOG3273e6g4sx2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: KOG3273ECOD (1.6)
N [auth Y]Ribosomal_S24ee6g4sY1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
M [auth Z]Ribosomal_S25e6g4sZ1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)
L [auth G]Ribosomal_S6ee6g4sG1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
K [auth H]Ribosomal_S7e_Ne6g4sH1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
K [auth H]Ribosomal_S7e_C_1e6g4sH2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_C_1ECOD (1.6)
J [auth F]Ribosomal_S7_1e6g4sF1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
H [auth E]3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region Chain ACATH (4.3.0)
H [auth E]2.40.50.740 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Ribosomal protein S4, central domainCATH (4.3.0)
H [auth E]2.30.30.30 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
G [auth c]2.40.50.140 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteinsCATH (4.3.0)
F [auth C]3.30.160.20 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (4.3.0)
F [auth C]3.30.230.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2CATH (4.3.0)
D [auth b]2.20.25.100 Mainly Beta Single Sheet N-terminal domain of TfIIb Ribosomal protein S27CATH (4.3.0)
EA [auth I]1.10.168.20 Mainly Alpha Orthogonal Bundle Phosducin domain 2CATH (4.3.0)
C [auth A]3.40.50.10490 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Glucose-6-phosphate isomerase like proteinCATH (4.3.0)
CA [auth L]2.40.50.1000 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) CATH (4.3.0)
BA [auth N]1.10.287.10 Mainly Alpha Orthogonal Bundle Helix Hairpins S15/NS1, RNA-bindingCATH (4.3.0)
AA [auth O]3.30.420.80 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
Y [auth Q]3.30.230.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2CATH (utative)
T [auth V]3.30.1230.20 Alpha Beta 2-Layer Sandwich Hypothetical Cytosolic Protein Chain: ACATH (4.3.0)
S [auth W]3.30.1370.30 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8 Chain: A, domain 1CATH (4.3.0)
S [auth W]3.30.1490.10 Alpha Beta 2-Layer Sandwich Dna Ligase domain 1CATH (4.3.0)
N [auth Y]3.30.70.3370 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
M [auth Z]1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
J [auth F]1.10.455.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S7 Ribosomal protein S7/S5CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
H [auth E]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
H [auth E]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
H [auth E]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain
H [auth E]PF00467KOW motif (KOW)KOW motif- Family
F [auth C]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
F [auth C]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
E [auth B]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
EA [auth I]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
DA [auth J]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
DA [auth J]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
C [auth A]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
C [auth A]PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
CA [auth L]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
CA [auth L]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
BA [auth N]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
AA [auth O]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
Z [auth P]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
Y [auth Q]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
X [auth S]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
W [auth T]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
T [auth V]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
S [auth W]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
Q [auth X]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
N [auth Y]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
N [auth Y]PF17146PIN domain of ribonuclease (PIN_6)PIN domain of ribonucleaseThis is a PIN domain found in eukaryotic ribonuclease Nob1 and archaeal ribonuclease VapC1 [1]. Budding yeast Nob1 is involved in proteasomal and 40S ribosomal subunit biogenesis [2]. VapC1 is a toxic component and a ribonuclease of a toxin-antitoxin ...This is a PIN domain found in eukaryotic ribonuclease Nob1 and archaeal ribonuclease VapC1 [1]. Budding yeast Nob1 is involved in proteasomal and 40S ribosomal subunit biogenesis [2]. VapC1 is a toxic component and a ribonuclease of a toxin-antitoxin (TA) module [3]. PIN domains are small protein domains identified by the presence of three strictly conserved acidic residues. Apart from these three residues, there is poor sequence conservation [4]. PIN domains are found in eukaryotes, eubacteria and archaea. In eukaryotes they are ribonucleases involved in nonsense mediated mRNA decay [5] and in processing of 18S ribosomal RNA [6]. In prokaryotes, they are the toxic components of toxin-antitoxin (TA) systems, their toxicity arising by virtue of their ribonuclease activity. The PIN domain TA systems are now called VapBC TAs(virulence associated proteins), where VapB is the inhibitor and VapC, the PIN-domain ribonuclease toxin [4].
Domain
L [auth G]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
J [auth F]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth e]40S ribosomal protein S30
H [auth E]40S ribosomal protein S4, X isoform
G [auth c]40S ribosomal protein S28
F [auth C]40S ribosomal protein S2
E [auth B]40S ribosomal protein S3a
D [auth b]40S ribosomal protein S27
GA [auth k]Unknown---
FA [auth s]RRP12---
EA [auth I]40S ribosomal protein S8
DA [auth J]40S ribosomal protein S9
C [auth A]40S ribosomal protein SA
CA [auth L]40S ribosomal protein S11
BA [auth N]40S ribosomal protein S13
AA [auth O]40S ribosomal protein S14
Z [auth P]40S ribosomal protein S15
Y [auth Q]40S ribosomal protein S16
X [auth S]40S ribosomal protein S18
W [auth T]40S ribosomal protein S19
V [auth t]Protein LTV1 homolog-
U [auth u]Pre-rRNA-processing protein TSR1 homolog
T [auth V]40S ribosomal protein S21
B [auth R]40S ribosomal protein S17
S [auth W]40S ribosomal protein S15a
R [auth w]Bystin
Q [auth X]40S ribosomal protein S23
P [auth x]RNA-binding protein PNO1
O [auth y]RNA-binding protein NOB1
N [auth Y]40S ribosomal protein S24
M [auth Z]40S ribosomal protein S25
L [auth G]40S ribosomal protein S6
K [auth H]40S ribosomal protein S7
J [auth F]40S ribosomal protein S5
A [auth 2]pre-18S ribosomal RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth e]IPR019954Ubiquitin conserved siteConserved Site
I [auth e]IPR006846Small ribosomal subunit protein eS30Family
I [auth e]IPR039415Ubiquitin-like protein FUBIDomain
I [auth e]IPR000626Ubiquitin-like domainDomain
I [auth e]IPR019956Ubiquitin domainDomain
I [auth e]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
H [auth E]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
H [auth E]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
H [auth E]IPR013845Small ribosomal subunit protein eS4, central regionDomain
H [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
H [auth E]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
H [auth E]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
H [auth E]IPR002942RNA-binding S4 domainDomain
H [auth E]IPR000876Small ribosomal subunit protein eS4Family
H [auth E]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
H [auth E]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
H [auth E]IPR005824KOWDomain
G [auth c]IPR028626Ribosomal protein eS28 conserved siteConserved Site
G [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
G [auth c]IPR000289Small ribosomal subunit protein eS28Family
F [auth C]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
F [auth C]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
F [auth C]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
F [auth C]IPR000851Small ribosomal subunit protein uS5Family
F [auth C]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
F [auth C]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
F [auth C]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth B]IPR001593Small ribosomal subunit protein eS1Family
E [auth B]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
E [auth B]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
D [auth b]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
D [auth b]IPR000592Small ribosomal subunit protein eS27Family
D [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EA [auth I]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
EA [auth I]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
EA [auth I]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
EA [auth I]IPR001047Small ribosomal subunit protein eS8Family
DA [auth J]IPR002942RNA-binding S4 domainDomain
DA [auth J]IPR022801Small ribosomal subunit protein uS4Family
DA [auth J]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
DA [auth J]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
DA [auth J]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
DA [auth J]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
C [auth A]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
C [auth A]IPR001865Small ribosomal subunit protein uS2Family
C [auth A]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
C [auth A]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
C [auth A]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
C [auth A]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
C [auth A]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
CA [auth L]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
CA [auth L]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
CA [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
CA [auth L]IPR000266Small ribosomal subunit protein uS17Family
CA [auth L]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
BA [auth N]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
BA [auth N]IPR000589Small ribosomal subunit protein uS15Family
BA [auth N]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
BA [auth N]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
AA [auth O]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
AA [auth O]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
AA [auth O]IPR001971Small ribosomal subunit protein uS11Family
Z [auth P]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
Z [auth P]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
Z [auth P]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
Z [auth P]IPR002222Small ribosomal subunit protein uS19Family
Y [auth Q]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
Y [auth Q]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Y [auth Q]IPR000754Small ribosomal subunit protein uS9Family
Y [auth Q]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
X [auth S]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
X [auth S]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
X [auth S]IPR001892Small ribosomal subunit protein uS13Family
X [auth S]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
W [auth T]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
W [auth T]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
W [auth T]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
W [auth T]IPR001266Small ribosomal subunit protein eS19Family
V [auth t]IPR007307Low temperature viability protein Ltv1Family
U [auth u]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
U [auth u]IPR030387Bms1/Tsr1-type G domainDomain
U [auth u]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
U [auth u]IPR012948AARP2CNDomain
T [auth V]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
T [auth V]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
T [auth V]IPR001931Small ribosomal subunit protein eS21Family
B [auth R]IPR001210Small ribosomal subunit protein eS17Family
B [auth R]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
B [auth R]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
S [auth W]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
S [auth W]IPR000630Small ribosomal subunit protein uS8Family
S [auth W]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
R [auth w]IPR007955BystinFamily
Q [auth X]IPR006032Small ribosomal subunit protein uS12Family
Q [auth X]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth X]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
P [auth x]IPR004087K Homology domainDomain
P [auth x]IPR055211PNO1, second type I KH domainDomain
P [auth x]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
P [auth x]IPR055212PNO1, first type I KH domainDomain
O [auth y]IPR033411Ribonuclease, PIN domainDomain
O [auth y]IPR017117Ribonuclease Nob1, eukaryoteFamily
O [auth y]IPR039907RNA-binding protein NOB1Family
O [auth y]IPR036283NOB1 zinc finger-like superfamilyHomologous Superfamily
O [auth y]IPR033461Putative WW-binding domain and destruction boxDomain
O [auth y]IPR002716PIN domainDomain
O [auth y]IPR014881Nin one binding (NOB1), Zn-ribbon-like domainDomain
N [auth Y]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
N [auth Y]IPR001976Small ribosomal subunit protein eS24Family
N [auth Y]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
N [auth Y]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
M [auth Z]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
M [auth Z]IPR004977Small ribosomal subunit protein eS25Family
L [auth G]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
L [auth G]IPR001377Small ribosomal subunit protein eS6Family
L [auth G]IPR014401Small ribosomal subunit protein eS6-likeFamily
K [auth H]IPR000554Small ribosomal subunit protein eS7Family
K [auth H]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
J [auth F]IPR023798Small ribosomal subunit protein uS7 domainDomain
J [auth F]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
J [auth F]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
J [auth F]IPR000235Small ribosomal subunit protein uS7Family
J [auth F]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I [auth e]PharosP62861
H [auth E]PharosP62701
G [auth c]PharosP62857
F [auth C]PharosP15880
D [auth b]PharosP42677
EA [auth I]PharosP62241
DA [auth J]PharosP46781
C [auth A]PharosP08865
CA [auth L]PharosP62280
BA [auth N]PharosP62277
AA [auth O]PharosP62263
Z [auth P]PharosP62841
Y [auth Q]PharosP62249
X [auth S]PharosP62269
W [auth T]PharosP39019
V [auth t]PharosQ96GA3
U [auth u]PharosQ2NL82
T [auth V]PharosP63220
B [auth R]PharosP08708
S [auth W]PharosP62244
R [auth w]PharosQ13895
Q [auth X]PharosP62266
P [auth x]PharosQ9NRX1
O [auth y]PharosQ9ULX3
N [auth Y]PharosP62847
M [auth Z]PharosP62851
L [auth G]PharosP62753
K [auth H]PharosP62081
J [auth F]PharosP46782