6GAW | pdb_00006gaw

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
M [auth B6]SCOP2 FamilyRibosomal protein L33p 8075059 4000511 SCOP2 (2022-06-29)
M [auth B6]SCOP2 SuperfamilyZn-binding ribosomal proteins 8075060 3001320 SCOP2 (2022-06-29)
CC [auth Aa]SCOP2B SuperfamilyMitochondrial 28S ribosomal protein S22-like 8096620 3002074 SCOP2B (2022-06-29)
YB [auth AU]SCOP2 FamilyRibosomal protein S21 8083455 4006173 SCOP2 (2022-06-29)
YB [auth AU]SCOP2 SuperfamilyRibosomal protein S21 8083456 3002159 SCOP2 (2022-06-29)
TB [auth AN]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052589 3000068 SCOP2B (2022-06-29)
SB [auth AL]SCOP2B SuperfamilyNucleic acid-binding proteins 8096284 3000135 SCOP2B (2022-06-29)
RB [auth AK]SCOP2B SuperfamilyTranslational machinery components 8096616 3000571 SCOP2B (2022-06-29)
KB [auth AB]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063848 3001397 SCOP2B (2022-06-29)
LA [auth BY]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082519 3000334 SCOP2B (2022-06-29)
IA [auth BV]SCOP2B Superfamilyl21p-like 8082451 3002005 SCOP2B (2022-06-29)
GA [auth BT]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8089132 3000334 SCOP2B (2022-06-29)
DA [auth BQ]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8076055 3000884 SCOP2B (2022-06-29)
BA [auth BO]SCOP2B Superfamily50S Ribosomal protein L14-like 8072068 3000433 SCOP2B (2022-06-29)
AA [auth BN]SCOP2 FamilyRibosomal protein L13 8098009 4003623 SCOP2 (2022-06-29)
AA [auth BN]SCOP2 SuperfamilyRibosomal protein L13 8098010 3001134 SCOP2 (2022-06-29)
W [auth BI]SCOP2B SuperfamilyL9 N-domain-like 8070579 3000338 SCOP2B (2022-06-29)
V [auth BF]SCOP2B SuperfamilyRibosomal protein L4 8096626 3001146 SCOP2B (2022-06-29)
P [auth B9]SCOP2 FamilyRibosomal protein L36 8083321 4003715 SCOP2 (2022-06-29)
P [auth B9]SCOP2 SuperfamilyRibosomal protein L36 8083322 3001346 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
N [auth B7]Ribosomal_L34e6gawB71 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
QC [auth Ap]Ribosomal_S18e6gawAp1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
OC [auth An]DUF1713e6gawAn1 A: extended segmentsX: Mitoribosomal protein mS38 (From Topology)H: Mitoribosomal protein mS38 (From Topology)T: Mitoribosomal protein mS38F: DUF1713ECOD (1.6)
NC [auth Am]KOG4695e6gawAm1 A: few secondary structure elementsX: p8-MTCP1-related (From Topology)H: p8-MTCP1-related (From Topology)T: p8-MTCP1-relatedF: KOG4695ECOD (1.6)
MC [auth Ak]UNK_F_TYPEe6gawAk1 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: UNK_F_TYPEECOD (1.6)
LC [auth Aj]MRP-S34e6gawAj1 A: beta barrelsX: SH3H: Mitoribosomal protein mS34 (From Topology)T: Mitoribosomal protein mS34F: MRP-S34ECOD (1.6)
KC [auth Ai]MRP-S33e6gawAi1 A: extended segmentsX: Mitoribosomal protein mS33 (From Topology)H: Mitoribosomal protein mS33 (From Topology)T: Mitoribosomal protein mS33F: MRP-S33ECOD (1.6)
JC [auth Ah]MRP-S31e6gawAh1 A: extended segmentsX: Mitoribosomal protein mS31 (From Topology)H: Mitoribosomal protein mS31 (From Topology)T: Mitoribosomal protein mS31F: MRP-S31ECOD (1.6)
IC [auth Ag]DAP3_Ce6gawAg1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: DAP3_CECOD (1.6)
IC [auth Ag]DAP3_Ne6gawAg2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DAP3_NECOD (1.6)
HC [auth Af]MRP-S35e6gawAf1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: MRP-S35ECOD (1.6)
M [auth B6]Ribosomal_L33e6gawB61 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
GC [auth Ae]H2O2_YaaD,MRP-S27e6gawAe1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: H2O2_YaaD,MRP-S27ECOD (1.6)
FC [auth Ad]MRP-S26e6gawAd1 A: extended segmentsX: Mitoribosomal protein mS26 (From Topology)H: Mitoribosomal protein mS26 (From Topology)T: Mitoribosomal protein mS26F: MRP-S26ECOD (1.6)
EC [auth Ac]L51_S25_CI-B8e6gawAc1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: L51_S25_CI-B8ECOD (1.6)
DC [auth Ab]MRP-S23e6gawAb1 A: alpha arraysX: RuvA-CH: Mitoribosomal protein mS23 (From Topology)T: Mitoribosomal protein mS23F: MRP-S23ECOD (1.6)
CC [auth Aa]MRP-S22e6gawAa1 A: a+b complex topologyX: Mitoribosomal protein mS22 (From Topology)H: Mitoribosomal protein mS22 (From Topology)T: Mitoribosomal protein mS22F: MRP-S22ECOD (1.6)
YB [auth AU]Ribosomal_S21_2e6gawAU1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: Ribosomal_S21_2ECOD (1.6)
XB [auth AR]Ribosomal_S18e6gawAR1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
L [auth B5]KOG4080e6gawB51 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: KOG4080ECOD (1.6)
WB [auth AQ]Ribosomal_S17_1e6gawAQ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
VB [auth AP]Ribosomal_S16e6gawAP1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16ECOD (1.6)
UB [auth AO]Ribosomal_S15_1e6gawAO1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
TB [auth AN]Ribosomal_S14_1e6gawAN1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_1ECOD (1.6)
SB [auth AL]Ribosom_S12_S23e6gawAL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
RB [auth AK]Ribosomal_S11e6gawAK1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
QB [auth AJ]Ribosomal_S10_2e6gawAJ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_2ECOD (1.6)
PB [auth AI]Ribosomal_S9e6gawAI1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
OB [auth AG]Ribosomal_S7e6gawAG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7ECOD (1.6)
NB [auth AF]Ribosomal_S6_1e6gawAF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6_1ECOD (1.6)
K [auth B4]Mitoc_L55e6gawB41 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Mitoc_L55ECOD (1.6)
MB [auth AE]Ribosomal_S5_Ce6gawAE3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
MB [auth AE]Ribosomal_S5_1e6gawAE2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_1ECOD (1.6)
MB [auth AE]KOG2646e6gawAE1 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: KOG2646ECOD (1.6)
LB [auth AC]MRP-S24e6gawAC1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: MRP-S24ECOD (1.6)
KB [auth AB]Ribosomal_S2_1e6gawAB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_1ECOD (1.6)
HB [auth Bx]Ribosomal_S18e6gawBx1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
GB [auth Bw]PDCD9e6gawBw1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PDCD9ECOD (1.6)
FB [auth Bv]CR6_interacte6gawBv1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L25 (From Topology)H: Mitochondrial 54S ribosomal protein L25 (From Topology)T: Mitochondrial 54S ribosomal protein L25F: CR6_interactECOD (1.6)
EB [auth Bu]RF-1_Ne6gawBu1 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: RF-1_NECOD (1.6)
DB [auth Bt]MRP-63e6gawBt1 A: extended segmentsX: Mitoribosomal protein mL63 (From Topology)H: Mitoribosomal protein mL63 (From Topology)T: Mitoribosomal protein mL63F: MRP-63ECOD (1.6)
J [auth B3]Ribosomal_L30e6gawB31 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
BB [auth Bp]MRP_L53e6gawBp1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: MRP_L53ECOD (1.6)
AB [auth Bo]EUF08791e6gawBo1 A: extended segmentsX: Mitoribosomal protein mL52 (From Topology)H: Mitoribosomal protein mL52 (From Topology)T: Mitoribosomal protein mL52F: EUF08791ECOD (1.6)
ZA [auth Bn]MRP-L51e6gawBn1 A: alpha bundlesX: Long alpha-hairpinH: Mitoribosomal protein mL51 (From Topology)T: Mitoribosomal protein mL51F: MRP-L51ECOD (1.6)
YA [auth Bm]Ribosomal_L50e6gawBm1 A: alpha bundlesX: ACP-likeH: Acyl-carrier protein (ACP) (From Topology)T: Acyl-carrier protein (ACP)F: Ribosomal_L50ECOD (1.6)
XA [auth Bl]Img2e6gawBl1 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: Img2ECOD (1.6)
WA [auth Bk]Ribosomal_S10_2e6gawBk1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_2ECOD (1.6)
VA [auth Bj]MRP-L46e6gawBj1 A: a+b two layersX: beta-GraspH: Nudix (From Topology)T: NudixF: MRP-L46ECOD (1.6)
UA [auth Bi]Tim44e6gawBi1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: Tim44ECOD (1.6)
TA [auth Bh]Ribonucleas_3_3e6gawBh1 A: alpha arraysX: RNase III catalytic domain-like (From Topology)H: RNase III catalytic domain-like (From Topology)T: RNase III catalytic domain-likeF: Ribonucleas_3_3ECOD (1.6)
TA [auth Bh]dsrme6gawBh2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: dsrmECOD (1.6)
I [auth B2]MRP-L47e6gawB21 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: MRP-L47ECOD (1.6)
SA [auth Bg]L51_S25_CI-B8e6gawBg1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: L51_S25_CI-B8ECOD (1.6)
RA [auth Bf]MRP-S32e6gawBf1 A: extended segmentsX: Mitoribosomal protein mL42 (From Topology)H: Mitoribosomal protein mL42 (From Topology)T: Mitoribosomal protein mL42F: MRP-S32ECOD (1.6)
QA [auth Be]MRP-L27e6gawBe1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L27 (From Topology)H: Mitochondrial 54S ribosomal protein L27 (From Topology)T: Mitochondrial 54S ribosomal protein L27F: MRP-L27ECOD (1.6)
PA [auth Bd]MRP-L28e6gawBd1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L28 (From Topology)H: Mitochondrial 54S ribosomal protein L28 (From Topology)T: Mitochondrial 54S ribosomal protein L28F: MRP-L28ECOD (1.6)
OA [auth Bc]TGSe6gawBc2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: TGSECOD (1.6)
OA [auth Bc]tRNA_SADe6gawBc1 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: ThrRS/AlaRS editing domainF: tRNA_SADECOD (1.6)
NA [auth Bb]PBPe6gawBb1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: PEBP-likeF: PBPECOD (1.6)
MA [auth Ba]PDCD9e6gawBa1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PDCD9ECOD (1.6)
LA [auth BY]ribosomal_L24_1e6gawBY1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
KA [auth BX]Ribosomal_L23_2e6gawBX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
JA [auth BW]Ribosomal_L22e6gawBW1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
H [auth B1]Ribosomal_L28_1e6gawB11 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Mitoribosomal protein bL28mF: Ribosomal_L28_1ECOD (1.6)
IA [auth BV]Ribosomal_L21pe6gawBV1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
HA [auth BU]Ribosomal_L20e6gawBU1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
GA [auth BT]Ribosomal_L19e6gawBT1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
FA [auth BS]Ribosomal_L18pe6gawBS1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
EA [auth BR]Ribosomal_L17e6gawBR1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17ECOD (1.6)
DA [auth BQ]Ribosomal_L16e6gawBQ1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
CA [auth BP]Ribosomal_L27Ae6gawBP1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
BA [auth BO]Ribosomal_L14e6gawBO1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
AA [auth BN]Ribosomal_L13e6gawBN1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
Y [auth BK]Ribosomal_L11e6gawBK2 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
Y [auth BK]Ribosomal_L11_Ne6gawBK1 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
G [auth B0]Ribosomal_L27e6gawB01 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
W [auth BI]Ribosomal_L9_N_1e6gawBI1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_N_1ECOD (1.6)
V [auth BF]Ribosomal_L4e6gawBF1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
U [auth BE]Ribosomal_L3e6gawBE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
T [auth BD]Ribosomal_L2e6gawBD2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2ECOD (1.6)
T [auth BD]Ribosomal_L2_Ce6gawBD1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
S [auth BC]GTP_EFTU_D2_3e6gawBC3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2_3ECOD (1.6)
S [auth BC]GTP_EFTU_D2e6gawBC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2ECOD (1.6)
S [auth BC]MnmE_helical_2nde6gawBC2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MnmE_helical_2ndECOD (1.6)
S [auth BC]IF-2e6gawBC4 A: a/b three-layered sandwichesX: Initiation factor IF2/eIF5b, domain 3 (From Topology)H: Initiation factor IF2/eIF5b, domain 3 (From Topology)T: Initiation factor IF2/eIF5b, domain 3F: IF-2ECOD (1.6)
P [auth B9]Ribosomal_L36e6gawB91 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
O [auth B8]Ribosomal_L35pe6gawB81 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
Z [auth BL]Ribosomal_L12e6gawBL1 A: a+b two layersX: ClpS-likeH: ClpS-related (From Topology)T: ClpS-relatedF: Ribosomal_L12ECOD (1.6)
F [auth HL]Ribosomal_L12_N_1e6gawHL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
E [auth GL]Ribosomal_L12_N_1e6gawGL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
D [auth FL]Ribosomal_L12_N_1e6gawFL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
C [auth EL]Ribosomal_L12_N_1e6gawEL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
B [auth DL]Ribosomal_L12_N_1e6gawDL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
A [auth CL]Ribosomal_L12_N_1e6gawCL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
N [auth B7]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
YB [auth AU]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
XB [auth AR]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
L [auth B5]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
WB [auth AQ]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
VB [auth AP]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
UB [auth AO]PF22330Small ribosomal subunit protein mS39, PPR (Rib_mS39_PPR)Small ribosomal subunit protein mS39, PPR- Repeat
UB [auth AO]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
TB [auth AN]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
SB [auth AL]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
RB [auth AK]PF10213Mitochondrial ribosomal subunit protein (MRP-S28)Mitochondrial ribosomal subunit protein- Family
RB [auth AK]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
QB [auth AJ]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
PB [auth AI]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
PB [auth AI]PF08293Mitochondrial ribosomal subunit S27 (MRP-S33)Mitochondrial ribosomal subunit S27- Family
OB [auth AG]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
OB [auth AG]PF10236Mitochondrial ribosomal death-associated protein 3 (DAP3)Mitochondrial ribosomal death-associated protein 3- Family
MB [auth AE]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
MB [auth AE]PF21251Small ribosomal subunit protein uS5m, N-terminal (Ribosomal_uS5m_N)Small ribosomal subunit protein uS5m, N-terminalThis entry represents an extension found at the N-terminal of the mitochondrial 28S Small ribosomal subunit protein uS5m [1,2]. This region lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the m ...This entry represents an extension found at the N-terminal of the mitochondrial 28S Small ribosomal subunit protein uS5m [1,2]. This region lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the mRNA channel entrance [2].
Domain
MB [auth AE]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
LB [auth AC]PF14955Mitochondrial ribosome subunit S24 (MRP-S24)Mitochondrial ribosome subunit S24- Family
LB [auth AC]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
KB [auth AB]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
KB [auth AB]PF10484Mitochondrial ribosomal protein S23 (MRP-S23)Mitochondrial ribosomal protein S23- Family
JB [auth AA]PF10245Mitochondrial 28S ribosomal protein S22 (MRP-S22)Mitochondrial 28S ribosomal protein S22- Family
J [auth B3]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
I [auth B2]PF06984Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47)Mitochondrial 39-S ribosomal protein L47 (MRP-L47)- Family
LA [auth BY]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
LA [auth BY]PF00467KOW motif (KOW)KOW motif- Family
KA [auth BX]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
JA [auth BW]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
H [auth B1]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
IA [auth BV]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
HA [auth BU]PF00472RF-1 domain (RF-1)RF-1 domainThis domain is found in peptide chain release factors such as RF-1 (Swiss:P07011) and RF-2 (Swiss:P07012), and a number of smaller proteins of unknown function such as Swiss:P40711. This domain contains the peptidyl-tRNA hydrolase activity. The domai ...This domain is found in peptide chain release factors such as RF-1 (Swiss:P07011) and RF-2 (Swiss:P07012), and a number of smaller proteins of unknown function such as Swiss:P40711. This domain contains the peptidyl-tRNA hydrolase activity. The domain contains a highly conserved motif GGQ, where the glutamine is thought to coordinate the water that mediates the hydrolysis.
Domain
HA [auth BU]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
GA [auth BT]PF14978Mitochondrial ribosome protein 63 (MRP-63)Mitochondrial ribosome protein 63- Family
GA [auth BT]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
FA [auth BS]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
EA [auth BR]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
DA [auth BQ]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
BA [auth BO]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
BA [auth BO]PF18699Mitoribosomal protein mL52 (MRPL52)Mitoribosomal protein mL52- Family
AA [auth BN]PF10244Mitochondrial ribosomal subunit (MRP-L51)Mitochondrial ribosomal subunit- Family
AA [auth BN]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
Y [auth BK]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
Y [auth BK]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
X [auth BJ]PF1178839S mitochondrial ribosomal protein L46 (MRP-L46)39S mitochondrial ribosomal protein L46- Family
X [auth BJ]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
W [auth BI]PF04280Tim44-like domain (Tim44)Tim44-like domainTim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostati ...Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [1]. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely. The crystal structure of the C terminal of Tim44 has revealed a large hydrophobic pocket which might play an important role in interacting with the acyl chains of lipid molecules in the mitochondrial membrane [3].
Domain
W [auth BI]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
V [auth BF]PF10210Mitochondrial 28S ribosomal protein S32 (MRP-S32)Mitochondrial 28S ribosomal protein S32- Family
V [auth BF]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
U [auth BE]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
T [auth BD]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
S [auth BC]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Domain
S [auth BC]PF22042Elongation factor G domain 2 (EF-G_D2)Elongation factor G domain 2Elongation factor G (EF-G) catalyzes the translocation step of translation. It consists of five structural domains, this entry represents the second domain [1]. This domain adopts a beta barrel structure. This family also includes domains found in ot ...Elongation factor G (EF-G) catalyzes the translocation step of translation. It consists of five structural domains, this entry represents the second domain [1]. This domain adopts a beta barrel structure. This family also includes domains found in other translation factors such as translation initiation factor IF-2, peptide chain release factor, etc.
Domain
S [auth BC]PF11987Translation-initiation factor 2 (IF-2)Translation-initiation factor 2IF-2 is a translation initiator in each of the three main phylogenetic domains (Eukaryotes [1], Bacteria [2] and Archaea [3]). IF2 interacts with formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal subunits [2]. Through these interactions, IF2 pr ...IF-2 is a translation initiator in each of the three main phylogenetic domains (Eukaryotes [1], Bacteria [2] and Archaea [3]). IF2 interacts with formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal subunits [2]. Through these interactions, IF2 promotes the binding of the initiator tRNA to the A site in the smaller ribosomal subunit and catalyses the hydrolysis of GTP following initiation-complex formation [2].
Domain
Q [auth BA]PF07147Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9)Mitochondrial 28S ribosomal protein S30 (PDCD9)- Family
P [auth B9]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
PF05046Mitochondrial large subunit ribosomal protein (Img2) (Img2)Mitochondrial large subunit ribosomal protein (Img2)This family of proteins have been identified as part of the mitochondrial large ribosomal subunit in yeast [1]. Domain
PF16320Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N)Ribosomal protein L7/L12 dimerisation domainThis is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1]. Domain
PF00542Ribosomal protein L7/L12 C-terminal domain (Ribosomal_L12)Ribosomal protein L7/L12 C-terminal domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
N [auth B7]Mitochondrial ribosomal protein L34
QC [auth Ap]28S ribosomal protein S18b, mitochondrial
PC [auth Ao]Pentatricopeptide repeat domain-containing protein 3, mitochondrial
OC [auth An]Aurora kinase A interacting protein 1-
NC [auth Am]Coiled-coil-helix-coiled-coil-helix domain-containing protein 1-
MC [auth Ak]28S ribosomal protein S35, mitochondrial
LC [auth Aj]28S ribosomal protein S34, mitochondrial---
KC [auth Ai]mS33- -
JC [auth Ah]mS31---
IC [auth Ag]Death associated protein 3-
HC [auth Af]28S ribosomal protein S28, mitochondrial-
M [auth B6]bL33m
GC [auth Ae]mS27---
FC [auth Ad]Mitochondrial ribosomal protein S26 -
EC [auth Ac]Mitochondrial ribosomal protein S25 -
DC [auth Ab]28S ribosomal protein S23, mitochondrial
CC [auth Aa]Mitochondrial ribosomal protein S22 -
BC [auth AZ]unassigned secondary structure elements---
AC [auth AX]MT-CO3 mRNA, mitochondrial---
ZB [auth AV]P-site fMet-tRNAMet, mitochondrial---
YB [auth AU]bS21m
XB [auth AR]Mitochondrial ribosomal protein S18C
L [auth B5]bL32m
WB [auth AQ]uS17m
VB [auth AP]bS16m---
UB [auth AO]Uncharacterized protein
TB [auth AN]Mitochondrial ribosomal protein S14
SB [auth AL]Mitochondrial ribosomal protein S12
RB [auth AK]28S ribosomal protein S11, mitochondrial
QB [auth AJ]Mitochondrial ribosomal protein S10- -
PB [auth AI]28S ribosomal protein S9, mitochondrial
OB [auth AG]Mitochondrial ribosomal protein S7
NB [auth AF]Mitochondrial ribosomal protein S6---
K [auth B4]39S ribosomal protein L55, mitochondrial
MB [auth AE]Mitochondrial ribosomal protein S5
LB [auth AC]Mitochondrial ribosomal protein S24- -
KB [auth AB]Mitochondrial ribosomal protein S2
JB [auth AA]12S ribosomal RNA, mitochondrial---
IB [auth Bz]unassigned secondary structure elements---
HB [auth Bx]Mitochondrial ribosomal protein S18A
GB [auth Bw]mL65---
FB [auth Bv]mL64- -
EB [auth Bu]Peptidyl-tRNA hydrolase ICT1, mitochondrial
DB [auth Bt]Mitochondrial ribosomal protein L57
J [auth B3]uL30m
CB [auth Bq]mL54 -
BB [auth Bp]mL53---
AB [auth Bo]39S ribosomal protein L52, mitochondrial
ZA [auth Bn]Mitochondrial ribosomal protein L51
YA [auth Bm]mL50- -
XA [auth Bl]39S ribosomal protein L49, mitochondrial
WA [auth Bk]Mitochondrial ribosomal protein L48- -
VA [auth Bj]Mitochondrial ribosomal protein L46 -
UA [auth Bi]mL45- -
TA [auth Bh]39S ribosomal protein L44, mitochondrial
I [auth B2]Mitochondrial ribosomal protein L47
SA [auth Bg]mL43
RA [auth Bf]mL42- -
QA [auth Be]Mitochondrial ribosomal protein L41
PA [auth Bd]39S ribosomal protein L40, mitochondrial isoform 1- -
OA [auth Bc]Mitochondrial ribosomal protein L39 -
NA [auth Bb]Mitochondrial ribosomal protein L38- -
MA [auth Ba]Mitochondrial ribosomal protein L37
LA [auth BY]39S ribosomal protein L24, mitochondrial
KA [auth BX]uL23m---
JA [auth BW]uL22m
H [auth B1]Mitochondrial ribosomal protein L28 -
IA [auth BV]Mitochondrial ribosomal protein L21
HA [auth BU]Mitochondrial ribosomal protein L20
GA [auth BT]Mitochondrial ribosomal protein L19
FA [auth BS]Mitochondrial ribosomal protein L18
EA [auth BR]39S ribosomal protein L17, mitochondrial
DA [auth BQ]39S ribosomal protein L16, mitochondrial
CA [auth BP]39S ribosomal protein L15, mitochondrial---
BA [auth BO]uL14m
AA [auth BN]39S ribosomal protein L13, mitochondrial
Y [auth BK]Mitochondrial ribosomal protein L11
G [auth B0]Mitochondrial ribosomal protein L27
X [auth BJ]Mitochondrial ribosomal protein L10- -
W [auth BI]Mitochondrial ribosomal protein L9
V [auth BF]Mitochondrial ribosomal protein L4
U [auth BE]ICT1
T [auth BD]39S ribosomal protein L2, mitochondrial
S [auth BC]Translation initiation factor IF-2, mitochondrial
R [auth BB]tRNA-Phe, mitochondrial---
Q [auth BA]16S ribosomal RNA, mitochondrial---
P [auth B9]Ribosomal protein
O [auth B8]Mitochondrial ribosomal protein L35- -
Mitochondrial ribosomal protein L12

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
N [auth B7]IPR000271Large ribosomal subunit protein bL34Family
QC [auth Ap]IPR040054Small ribosomal subunit protein mS40Family
QC [auth Ap]IPR001648Small ribosomal subunit protein bS18Family
QC [auth Ap]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
PC [auth Ao]IPR037387Pentatricopeptide repeat domain-containing protein 3Family
PC [auth Ao]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
PC [auth Ao]IPR055063Small ribosomal subunit protein mS39, PPRRepeat
PC [auth Ao]IPR002885Pentatricopeptide repeatRepeat
OC [auth An]IPR013177Ribosomal protein mS38, C-terminalDomain
NC [auth Am]IPR010625CHCHDomain
NC [auth Am]IPR009069Cysteine alpha-hairpin motif superfamilyHomologous Superfamily
NC [auth Am]IPR033620Small ribosomal subunit protein mS37, metazoanFamily
MC [auth Ak]IPR039848Small ribosomal subunit protein mS35, mitochondrialFamily
MC [auth Ak]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
KC [auth Ai]IPR013219Small ribosomal subunit protein mS33Family
IC [auth Ag]IPR008092Small ribosomal subunit protein mS29, metazoaFamily
IC [auth Ag]IPR019368Small ribosomal subunit protein mS29Family
IC [auth Ag]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
HC [auth Af]IPR019375Small ribosomal subunit protein bS1mFamily
M [auth B6]IPR052008Mitochondrial ribosomal protein bL33Family
M [auth B6]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
M [auth B6]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
M [auth B6]IPR001705Large ribosomal subunit protein bL33Family
FC [auth Ad]IPR002012Gonadotropin-releasing hormoneConserved Site
FC [auth Ad]IPR019792GonadoliberinFamily
EC [auth Ac]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
EC [auth Ac]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
EC [auth Ac]IPR040049Ribosomal subunit protein mS25/mL61, mitochondrialFamily
DC [auth Ab]IPR019520Small ribosomal subunit protein mS23, metazoaFamily
DC [auth Ab]IPR023611Small ribosomal subunit protein mS23, conserved domain, metazoaDomain
CC [auth Aa]IPR019374Small ribosomal subunit protein mS22Family
YB [auth AU]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
YB [auth AU]IPR001911Small ribosomal subunit protein bS21Family
XB [auth AR]IPR001648Small ribosomal subunit protein bS18Family
XB [auth AR]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
XB [auth AR]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
L [auth B5]IPR002677Large ribosomal subunit protein bL32Family
L [auth B5]IPR051991Mitochondrial ribosomal protein bL32Family
L [auth B5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
WB [auth AQ]IPR039193Small ribosomal subunit protein uS17m, metazoaFamily
WB [auth AQ]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
WB [auth AQ]IPR000266Small ribosomal subunit protein uS17Family
UB [auth AO]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
UB [auth AO]IPR052137Universal small ribosomal subunit uS15Family
UB [auth AO]IPR000589Small ribosomal subunit protein uS15Family
TB [auth AN]IPR001209Small ribosomal subunit protein uS14Family
SB [auth AL]IPR006032Small ribosomal subunit protein uS12Family
SB [auth AL]IPR005679Ribosomal protein uS12, bacteriaFamily
SB [auth AL]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
RB [auth AK]IPR001971Small ribosomal subunit protein uS11Family
RB [auth AK]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
RB [auth AK]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
QB [auth AJ]IPR027486Small ribosomal subunit protein uS10 domainDomain
QB [auth AJ]IPR040055Small ribosomal subunit protein uS10mFamily
QB [auth AJ]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
PB [auth AI]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
PB [auth AI]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
PB [auth AI]IPR000754Small ribosomal subunit protein uS9Family
PB [auth AI]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
OB [auth AG]IPR000235Small ribosomal subunit protein uS7Family
OB [auth AG]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
OB [auth AG]IPR023798Small ribosomal subunit protein uS7 domainDomain
K [auth B4]IPR044884Large ribosomal subunit protein mL55 superfamilyHomologous Superfamily
K [auth B4]IPR018615Large ribosomal subunit protein mL55Family
MB [auth AE]IPR000851Small ribosomal subunit protein uS5Family
MB [auth AE]IPR048584Small ribosomal subunit protein uS5m, N-terminal domainDomain
MB [auth AE]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
MB [auth AE]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
MB [auth AE]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
MB [auth AE]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
MB [auth AE]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
LB [auth AC]IPR026146Small ribosomal subunit protein uS3m, metazoanFamily
KB [auth AB]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
KB [auth AB]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
KB [auth AB]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
KB [auth AB]IPR001865Small ribosomal subunit protein uS2Family
HB [auth Bx]IPR001648Small ribosomal subunit protein bS18Family
HB [auth Bx]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
FB [auth Bv]IPR018472Large ribosomal subunit protein mL64Family
FB [auth Bv]IPR043035Large ribosomal subunit protein mL64 domain superfamilyHomologous Superfamily
EB [auth Bu]IPR000352Peptide chain release factor class IDomain
EB [auth Bu]IPR052104Mitochondrial Release Factor mL62Family
DB [auth Bt]IPR016576Large ribosomal subunit protein mL63Family
J [auth B3]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
J [auth B3]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
J [auth B3]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
CB [auth Bq]IPR013870Large ribosomal subunit protein mL54Family
AB [auth Bo]IPR034596Large ribosomal subunit protein mL52Family
ZA [auth Bn]IPR019373Large ribosomal subunit protein mL51Family
YA [auth Bm]IPR018305Large ribosomal subunit protein mL50Family
XA [auth Bl]IPR007740Large ribosomal subunit protein mL49Family
WA [auth Bk]IPR027486Small ribosomal subunit protein uS10 domainDomain
WA [auth Bk]IPR027487Large ribosomal subunit protein mL48Family
WA [auth Bk]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
VA [auth Bj]IPR015797NUDIX hydrolase-like domain superfamilyHomologous Superfamily
VA [auth Bj]IPR021757Large ribosomal subunit protein mL46, N-terminalDomain
VA [auth Bj]IPR040008Large ribosomal subunit protein mL46Family
VA [auth Bj]IPR033650Large ribosomal subunit protein mL46, NUDIX domainDomain
UA [auth Bi]IPR032710NTF2-like domain superfamilyHomologous Superfamily
UA [auth Bi]IPR007379Tim44-like domainDomain
UA [auth Bi]IPR051975Mitochondrial Large Ribosomal Subunit mL45Family
TA [auth Bh]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
TA [auth Bh]IPR044444Large ribosomal subunit protein mL44, dsRNA binding domain, metazoaDomain
TA [auth Bh]IPR055189Large ribosomal subunit protein mL44, endonuclease domainDomain
TA [auth Bh]IPR014720Double-stranded RNA-binding domainDomain
I [auth B2]IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
I [auth B2]IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
SA [auth Bg]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
SA [auth Bg]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
SA [auth Bg]IPR039927Large ribosomal subunit protein mL43Family
RA [auth Bf]IPR019346Large ribosomal subunit protein mL42Family
QA [auth Be]IPR019189Large ribosomal subunit protein mL41Family
PA [auth Bd]IPR019192Large ribosomal subunit protein mL40Family
PA [auth Bd]IPR039145Large ribosomal subunit protein mL40, metazoa/plantsFamily
OA [auth Bc]IPR012676TGS-likeHomologous Superfamily
OA [auth Bc]IPR018163Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamilyHomologous Superfamily
OA [auth Bc]IPR050062Proline-tRNA synthetaseFamily
OA [auth Bc]IPR004095TGSDomain
OA [auth Bc]IPR012675Beta-grasp domain superfamilyHomologous Superfamily
NA [auth Bb]IPR036610PEBP-like superfamilyHomologous Superfamily
NA [auth Bb]IPR008914Phosphatidylethanolamine-binding proteinFamily
NA [auth Bb]IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
MA [auth Ba]IPR052482Mitochondrial large ribosomal subunit mL37Family
MA [auth Ba]IPR010793Large ribosomal subunit protein mL37/mL65Family
LA [auth BY]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
LA [auth BY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
LA [auth BY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
LA [auth BY]IPR003256Large ribosomal subunit protein uL24Family
LA [auth BY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
LA [auth BY]IPR005824KOWDomain
LA [auth BY]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
JA [auth BW]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
JA [auth BW]IPR001063Large ribosomal subunit protein uL22Family
JA [auth BW]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
H [auth B1]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
H [auth B1]IPR026569Large ribosomal subunit protein bL28Family
H [auth B1]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
IA [auth BV]IPR028909Large ribosomal subunit protein bL21-likeFamily
IA [auth BV]IPR001787Large ribosomal subunit protein bL21Family
IA [auth BV]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
HA [auth BU]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
HA [auth BU]IPR005813Large ribosomal subunit protein bL20Family
GA [auth BT]IPR001857Large ribosomal subunit protein bL19Family
GA [auth BT]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
GA [auth BT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FA [auth BS]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
FA [auth BS]IPR057268Large ribosomal subunit protein uL18Family
FA [auth BS]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
EA [auth BR]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
EA [auth BR]IPR000456Large ribosomal subunit protein bL17Family
DA [auth BQ]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
DA [auth BQ]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
DA [auth BQ]IPR016180Large ribosomal subunit protein uL16 domainDomain
DA [auth BQ]IPR047873Large ribosomal subunit protein uL16Family
BA [auth BO]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
BA [auth BO]IPR000218Large ribosomal subunit protein uL14Family
AA [auth BN]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
AA [auth BN]IPR005822Large ribosomal subunit protein uL13Family
AA [auth BN]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
AA [auth BN]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
Y [auth BK]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
Y [auth BK]IPR000911Ribosomal protein uL11Family
Y [auth BK]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
Y [auth BK]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
G [auth B0]IPR001684Large ribosomal subunit protein bL27Family
X [auth BJ]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
X [auth BJ]IPR001790Large ribosomal subunit protein uL10Family
X [auth BJ]IPR047865Large ribosomal subunit protein uL10, bacteria/organellaFamily
W [auth BI]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
W [auth BI]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
W [auth BI]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
W [auth BI]IPR054302Large ribosomal subunit protein bL9m, C-terminal domainDomain
W [auth BI]IPR056864Large ribosomal subunit protein bL9m, N-terminal domainDomain
W [auth BI]IPR000244Large ribosomal subunit protein bL9Family
V [auth BF]IPR013005Large ribosomal subunit protein uL4-likeFamily
V [auth BF]IPR002136Large ribosomal subunit protein uL4Family
V [auth BF]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
U [auth BE]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
U [auth BE]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
U [auth BE]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
U [auth BE]IPR000597Large ribosomal subunit protein uL3Family
T [auth BD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
T [auth BD]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
T [auth BD]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
T [auth BD]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
T [auth BD]IPR002171Large ribosomal subunit protein uL2Family
S [auth BC]IPR005225Small GTP-binding domainDomain
S [auth BC]IPR000178Translation initiation factor IF-2, bacterial-likeFamily
S [auth BC]IPR000795Translational (tr)-type GTP-binding domainDomain
S [auth BC]IPR053905Elongation factor G-like, domain IIDomain
S [auth BC]IPR044145Translation initiation factor IF-2, domain IIDomain
S [auth BC]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
S [auth BC]IPR015760Translation initiation factor IF- 2Family
S [auth BC]IPR036925Translation initiation factor IF-2, domain 3 superfamilyHomologous Superfamily
S [auth BC]IPR023115Translation initiation factor IF- 2, domain 3Domain
S [auth BC]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
P [auth B9]IPR000473Large ribosomal subunit protein bL36Family
P [auth B9]IPR052143Mitochondrial Large Ribosomal Subunit bL36mFamily
P [auth B9]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
O [auth B8]IPR019338Large ribosomal subunit protein bL35mFamily
IPR008932Large ribosomal subunit protein bL12, oligomerizationDomain
IPR013823Large ribosomal subunit protein bL12, C-terminalDomain
IPR036235Large ribosomal subunit protein bL12, oligomerization domain superfamilyHomologous Superfamily
IPR014719Ribosomal protein bL12, C-terminal/adaptor protein ClpS-likeHomologous Superfamily
IPR000206Large ribosomal subunit protein bL12Family

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