6HM2 | pdb_00006hm2

Structure in P1 form of the PBP AgtB in complex with agropinic acid from A.tumefacien R10

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6hm2a1	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	automated matches	automated matches	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)
A	d6hm2a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)
B	d6hm2b1	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	automated matches	automated matches	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)
B	d6hm2b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)
C	d6hm2c1	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	automated matches	automated matches	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)
C	d6hm2c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)
D	d6hm2d1	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	automated matches	automated matches	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)
D	d6hm2d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)
E	d6hm2e1	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	automated matches	automated matches	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)
E	d6hm2e2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	SBP_bac_6_1	e6hm2A1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II (From Topology)	H: Periplasmic binding protein-like II (From Topology)	T: Periplasmic binding protein-like II	F: SBP_bac_6_1	ECOD (1.6)
A	SBP_bac_1_N_1	e6hm2A2	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II (From Topology)	H: Periplasmic binding protein-like II (From Topology)	T: Periplasmic binding protein-like II	F: SBP_bac_1_N_1	ECOD (1.6)
B	SBP_bac_6_1	e6hm2B1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II (From Topology)	H: Periplasmic binding protein-like II (From Topology)	T: Periplasmic binding protein-like II	F: SBP_bac_6_1	ECOD (1.6)
B	SBP_bac_1_N_1	e6hm2B2	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II (From Topology)	H: Periplasmic binding protein-like II (From Topology)	T: Periplasmic binding protein-like II	F: SBP_bac_1_N_1	ECOD (1.6)
C	SBP_bac_6_1	e6hm2C1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II (From Topology)	H: Periplasmic binding protein-like II (From Topology)	T: Periplasmic binding protein-like II	F: SBP_bac_6_1	ECOD (1.6)
C	SBP_bac_1_N_1	e6hm2C2	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II (From Topology)	H: Periplasmic binding protein-like II (From Topology)	T: Periplasmic binding protein-like II	F: SBP_bac_1_N_1	ECOD (1.6)
D	SBP_bac_6_1	e6hm2D2	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II (From Topology)	H: Periplasmic binding protein-like II (From Topology)	T: Periplasmic binding protein-like II	F: SBP_bac_6_1	ECOD (1.6)
D	SBP_bac_1_N_1	e6hm2D1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II (From Topology)	H: Periplasmic binding protein-like II (From Topology)	T: Periplasmic binding protein-like II	F: SBP_bac_1_N_1	ECOD (1.6)
E	SBP_bac_6_1	e6hm2E1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II (From Topology)	H: Periplasmic binding protein-like II (From Topology)	T: Periplasmic binding protein-like II	F: SBP_bac_6_1	ECOD (1.6)
E	SBP_bac_1_N_1	e6hm2E2	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II (From Topology)	H: Periplasmic binding protein-like II (From Topology)	T: Periplasmic binding protein-like II	F: SBP_bac_1_N_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)
B	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)
C	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)
D	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)
E	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.