6J7M | pdb_00006j7m

Complex structure of the Pseudomonas aeruginosa rhamnosyltransferase EarP with the acceptor elongation factor EF-P

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth C]UNK_F_TYPEe6j7mC1 A: a/b three-layered sandwichesX: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)T: UDP-Glycosyltransferase/glycogen phosphorylaseF: UNK_F_TYPEECOD (1.6)
AUNK_F_TYPEe6j7mA2 A: a/b three-layered sandwichesX: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)T: UDP-Glycosyltransferase/glycogen phosphorylaseF: UNK_F_TYPEECOD (1.6)
D [auth N]EFPe6j7mN1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: EFPECOD (1.6)
D [auth N]Elong-fact-P_Ce6j7mN2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Elong-fact-P_CECOD (1.6)
D [auth N]EFP_Ne6j7mN3 A: beta barrelsX: SH3H: SH3T: SH3F: EFP_NECOD (1.6)
C [auth M]EFPe6j7mM1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: EFPECOD (1.6)
C [auth M]Elong-fact-P_Ce6j7mM3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Elong-fact-P_CECOD (1.6)
C [auth M]EFP_Ne6j7mM2 A: beta barrelsX: SH3H: SH3T: SH3F: EFP_NECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
B [auth C]		PF10093Elongation-Factor P (EF-P) rhamnosyltransferase EarP (EarP)Elongation-Factor P (EF-P) rhamnosyltransferase EarP- Family
C [auth M],
D [auth N]		PF09285Elongation factor P, C-terminal (Elong-fact-P_C)Elongation factor P, C-terminalMembers of this family of nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology [1]. Domain
C [auth M],
D [auth N]		PF01132Elongation factor P (EF-P) OB domain (EFP)Elongation factor P (EF-P) OB domainDomain
C [auth M],
D [auth N]		PF08207Elongation factor P (EF-P) KOW-like domain (EFP_N)Elongation factor P (EF-P) KOW-like domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
B [auth C]		Earp - -
C [auth M],
D [auth N]		Elongation factor P

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
B [auth C]		IPR016633Protein-arginine rhamnosyltransferase EarPFamily
C [auth M],
D [auth N]		IPR011768Translation elongation factor PFamily
C [auth M],
D [auth N]		IPR020599Translation elongation factor P/YeiPFamily
C [auth M],
D [auth N]		IPR015365Elongation factor P, C-terminalDomain
C [auth M],
D [auth N]		IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth M],
D [auth N]		IPR013185Translation elongation factor, KOW-likeDomain
C [auth M],
D [auth N]		IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
C [auth M],
D [auth N]		IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
C [auth M],
D [auth N]		IPR001059Translation elongation factor P/YeiP, centralDomain