6MUJ | pdb_00006muj

Formylglycine generating enzyme bound to copper

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d6muje_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	(Streptomyces coelicolor A3(2) ) [TaxId: 100226 ],	SCOPe (2.08)
D	d6mujd_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	(Streptomyces coelicolor A3(2) ) [TaxId: 100226 ],	SCOPe (2.08)
C	d6mujc_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	(Streptomyces coelicolor A3(2) ) [TaxId: 100226 ],	SCOPe (2.08)
B	d6mujb_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	(Streptomyces coelicolor A3(2) ) [TaxId: 100226 ],	SCOPe (2.08)
A	d6muja_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	(Streptomyces coelicolor A3(2) ) [TaxId: 100226 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	C-type lectin-like	8087330	3001261	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	C-type lectin-like	8087330	3001261	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	C-type lectin-like	8087330	3001261	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	C-type lectin-like	8087330	3001261	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	C-type lectin-like	8087330	3001261	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	FGE-sulfatase	e6mujE1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: Sulfatase-modifying factor-like	F: FGE-sulfatase	ECOD (1.6)
D	FGE-sulfatase	e6mujD1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: Sulfatase-modifying factor-like	F: FGE-sulfatase	ECOD (1.6)
C	FGE-sulfatase	e6mujC1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: Sulfatase-modifying factor-like	F: FGE-sulfatase	ECOD (1.6)
B	FGE-sulfatase	e6mujB1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: Sulfatase-modifying factor-like	F: FGE-sulfatase	ECOD (1.6)
A	FGE-sulfatase	e6mujA1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: Sulfatase-modifying factor-like	F: FGE-sulfatase	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	3.90.1580.10	Alpha Beta	Alpha-Beta Complex	paralog of FGE (formylglycine-generating enzyme)	paralog of FGE (formylglycine-generating enzyme)	CATH (4.3.0)
D	3.90.1580.10	Alpha Beta	Alpha-Beta Complex	paralog of FGE (formylglycine-generating enzyme)	paralog of FGE (formylglycine-generating enzyme)	CATH (4.3.0)
C	3.90.1580.10	Alpha Beta	Alpha-Beta Complex	paralog of FGE (formylglycine-generating enzyme)	paralog of FGE (formylglycine-generating enzyme)	CATH (4.3.0)
B	3.90.1580.10	Alpha Beta	Alpha-Beta Complex	paralog of FGE (formylglycine-generating enzyme)	paralog of FGE (formylglycine-generating enzyme)	CATH (4.3.0)
A	3.90.1580.10	Alpha Beta	Alpha-Beta Complex	paralog of FGE (formylglycine-generating enzyme)	paralog of FGE (formylglycine-generating enzyme)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF03781	Sulfatase-modifying factor enzyme 1-like domain (FGE-sulfatase)	Sulfatase-modifying factor enzyme 1-like domain	This domain is found in eukaryotic proteins [1] required for post-translational sulfatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulfatase deficiency (MSD) [2]. The protein product of the SUMF1 gene is FG ...	This domain is found in eukaryotic proteins [1] required for post-translational sulfatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulfatase deficiency (MSD) [2]. The protein product of the SUMF1 gene is FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. Sulfatases are enzymes essential for degradation and remodelling of sulfate esters, and formylglycine (FGly), the key catalytic in the active site, is unique to sulfatases [3]. FGE is localised to the endoplasmic reticulum (ER) and interacts with and modifies the unfolded form of newly synthesised sulfatases. FGE is a single-domain monomer with a surprising paucity of secondary structure that adopts a unique fold which is stabilised by two Ca2+ ions. The effect of all mutations found in MSD patients is explained by the FGE structure, providing a molecular basis for MSD. A redox-active disulfide bond is present in the active site of FGE. An oxidised cysteine residue, possibly cysteine sulfenic acid, has been detected that may allow formulation of a structure-based mechanism for FGly formation from cysteine residues in all sulfatases [4]. In Mycobacteria and Treponema denticola this enzyme functions as an iron(II)-dependent oxidoreductase [5,6]. This domain is also found in the Serine/threonine-protein kinase Pkn1 from Chlamydia trachomatis which is a multidomain protein. Pkn1 plays a role in specific interactions with host proteins during host intracellular growth.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	Formylglycine-generating enzyme	cation binding cupric ion binding transition metal ion binding copper ion binding ion binding binding metal ion binding small molecule binding calcium ion binding oxidoreductase activity, acting on a sulfur group of donors oxidoreductase activity oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor formylglycine-generating oxidase activity catalytic activity	macromolecule modification metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein oxidation	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR005532	Sulfatase-modifying factor enzyme-like domain	Domain
A, B, C, D, E	IPR042095	Sulfatase-modifying factor enzyme superfamily	Homologous Superfamily
A, B, C, D, E	IPR016187	C-type lectin fold	Homologous Superfamily
A, B, C, D, E	IPR051043	Sulfatase Modifying Factor and Kinase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.