6OK1 | pdb_00006ok1

Ltp2-ChsH2(DUF35) aldolase


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AThiolase_C_1e6ok1A2 A: a/b three-layered sandwichesX: Thiolase-like (From Topology)H: Thiolase-like (From Topology)T: Thiolase-likeF: Thiolase_C_1ECOD (1.6)
AACP_syn_IIIe6ok1A1 A: a/b three-layered sandwichesX: Thiolase-like (From Topology)H: Thiolase-like (From Topology)T: Thiolase-likeF: ACP_syn_IIIECOD (1.6)
CThiolase_C_1e6ok1C2 A: a/b three-layered sandwichesX: Thiolase-like (From Topology)H: Thiolase-like (From Topology)T: Thiolase-likeF: Thiolase_C_1ECOD (1.6)
CACP_syn_IIIe6ok1C1 A: a/b three-layered sandwichesX: Thiolase-like (From Topology)H: Thiolase-like (From Topology)T: Thiolase-likeF: ACP_syn_IIIECOD (1.6)
BUNK_F_TYPEe6ok1B2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: UNK_F_TYPEECOD (1.6)
BUNK_F_TYPEe6ok1B1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: UNK_F_TYPEECOD (1.6)
DUNK_F_TYPEe6ok1D2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: UNK_F_TYPEECOD (1.6)
DUNK_F_TYPEe6ok1D1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: UNK_F_TYPEECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C
PF00108Thiolase, N-terminal domain (Thiolase_N)Thiolase, N-terminal domainThiolase is reported to be structurally related to beta-ketoacyl synthase (Pfam:PF00109), and also chalcone synthase. Domain
A, C
PF22691Thiolase C-terminal domain-like (Thiolase_C_1)Thiolase C-terminal domain-likeThis domain is found C-terminal in a number of thiolases and their homologues. Thiolases are essential CoA-dependent enzymes in lipid metabolism. This domain folds into a four-stranded antiparallel beta-sheet with helices packed on one side. Domain
B, D
PF12172ChsH2, rubredoxin-like zinc ribbon domain (zf-ChsH2)ChsH2, rubredoxin-like zinc ribbon domainThis domain is found at the C-terminal end of the probable enoyl -CoA hydratase alpha subunit from Thermomonospora curvata (ChsH2) and similar archaeal and bacterial proteins. ChsH2 is likely to be involved in bile acid degradation. The C-terminal re ...This domain is found at the C-terminal end of the probable enoyl -CoA hydratase alpha subunit from Thermomonospora curvata (ChsH2) and similar archaeal and bacterial proteins. ChsH2 is likely to be involved in bile acid degradation. The C-terminal region of this protein is organised into two domains: an N-terminal zinc finger domain with a three-stranded antiparallel beta-sheet and an N-terminal alpha-helix (this entry) and a OB-fold domain (Pfam:PF01796) [5]. The domain is duplicated in some members like Swiss:O53566 from M.tuberculosis. The structure of Swiss:Q97WQ4 from Saccharolobus solfataricus reveals two long N-terminal helices followed by a rubredoxin -like zinc ribbon domain represented in this family and a C-terminal OB fold domain [1]. Zinc is chelated by the four conserved cysteines in the alignment.
Domain
B, D
PF01796ChsH2, C-terminal OB-fold domain (OB_ChsH2_C)ChsH2, C-terminal OB-fold domainThis domain is found at the C-terminal end of the probable enoyl -CoA hydratase alpha subunit from Thermomonospora curvata (ChsH2) and similar archaeal and bacterial proteins. ChsH2 is likely to be involved in bile acid degradation. The C-terminal re ...This domain is found at the C-terminal end of the probable enoyl -CoA hydratase alpha subunit from Thermomonospora curvata (ChsH2) and similar archaeal and bacterial proteins. ChsH2 is likely to be involved in bile acid degradation. The C-terminal region of this protein is organised into two domains: an N-terminal zinc finger domain (Pfam:PF12172) and an OB-fold domain (this entry) that consists of a five-stranded beta-barrel [6]. This domain is also found in 3-oxo-4,17- pregnadiene-20-carboxyl-CoA hydratase alpha subunit from Mycobacterium tuberculosis that is involved in cholesterol side chain degradation [3]. It is also found in Methanothermococcus thermolithotrophicus HMGCS, an enzyme complex comprising the thiolase and 3-hydroxy-3-methylglutaryl (HMG)-CoA synthase, that catalyses the second reaction in the mevalonate pathway-the exergonic condensation of acetoacetyl-CoA and acetyl-CoA to HMG-CoA [4].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C
Lipid-transfer protein -
B, D
ChsH2(DUF35) -