6P95 | pdb_00006p95

Structure of Lassa virus glycoprotein in complex with Fab 25.6A


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyLassa virus GP1 subunit, receptor binding domain-like 8106407 3002852 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLassa virus GP1 subunit, receptor binding domain-like 8106407 3002852 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyLassa virus GP1 subunit, receptor binding domain-like 8106407 3002852 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth a]V-sete6p95a1 A: alpha bundlesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (develop294)
K [auth b]V-sete6p95b1 A: alpha bundlesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (develop294)
L [auth c]MAM33e6p95c1 A: alpha bundlesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: MAM33ECOD (develop294)
EMAM33e6p95E1 A: alpha bundlesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: MAM33ECOD (develop294)
I [auth L]V-sete6p95L1 A: alpha bundlesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (develop294)
GV-sete6p95G1 A: alpha bundlesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (develop294)
DMAM33e6p95D1 A: alpha bundlesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: MAM33ECOD (develop294)
FV-sete6p95F1 A: alpha bundlesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (develop294)
HV-sete6p95H1 A: alpha bundlesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (develop294)
AV-sete6p95A1 A: alpha bundlesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (develop294)
BV-sete6p95B1 A: alpha bundlesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (develop294)
CMAM33e6p95C1 A: alpha bundlesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: MAM33ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
E2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
I [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
G2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
D2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
F2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
H2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
E,
G,
I [auth L]
Fab 25.6A L-LAMBDA Homo sapiens (human) IGLV2-14*01, IGLJ3*02, IGLC2*01, IGLC2*02, IGLC3*04 V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA IG FAB-GAMMA-1_LAMBDA IMGT (202610-0)
D, F, H
Fab 25.6A VH-CH1 Homo sapiens (human) IGHV3-21*01, IGHV3-21*02, IGHV3-21*04, IGHV3-21*03, IGHJ6*01, IGHG1*03, IGHG1*08, IGHG1*06 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_LAMBDA IMGT (202610-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
E,
G,
I [auth L]
Light ChainIGLV2 Lambdaunknown | pre-glycoprotein polyprotein gp complexSAbDab (2026-03-20)
D, F, H
Heavy ChainIGHV3 -unknown | pre-glycoprotein polyprotein gp complexSAbDab (2026-03-20)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
J [auth a],
K [auth b],
L [auth c]
Pre-glycoprotein polyprotein GP complex
E,
G,
I [auth L]
FAB Antibody light chain---
D, F, H
FAB Antibody heavy chain---
A, B, C
Pre-glycoprotein polyprotein GP complex