Structure of Lassa virus glycoprotein in complex with Fab 25.6A
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | Lassa virus GP1 subunit, receptor binding domain-like | 8106407 | 3002852 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Lassa virus GP1 subunit, receptor binding domain-like | 8106407 | 3002852 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Lassa virus GP1 subunit, receptor binding domain-like | 8106407 | 3002852 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| L [auth c] | UNK_F_TYPE | e6p95c1 | A: a+b complex topology | X: Arenavirus glycoprotein GP2 (From Topology) | H: Arenavirus glycoprotein GP2 (From Topology) | T: Arenavirus glycoprotein GP2 | F: UNK_F_TYPE | ECOD (1.6) |
| K [auth b] | UNK_F_TYPE | e6p95b1 | A: a+b complex topology | X: Arenavirus glycoprotein GP2 (From Topology) | H: Arenavirus glycoprotein GP2 (From Topology) | T: Arenavirus glycoprotein GP2 | F: UNK_F_TYPE | ECOD (1.6) |
| J [auth a] | UNK_F_TYPE | e6p95a1 | A: a+b complex topology | X: Arenavirus glycoprotein GP2 (From Topology) | H: Arenavirus glycoprotein GP2 (From Topology) | T: Arenavirus glycoprotein GP2 | F: UNK_F_TYPE | ECOD (1.6) |
| E | C1-set | e6p95E1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set | ECOD (1.6) |
| E | V-set_3 | e6p95E2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
| G | C1-set | e6p95G2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set | ECOD (1.6) |
| G | V-set_3 | e6p95G1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
| I [auth L] | C1-set | e6p95L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set | ECOD (1.6) |
| I [auth L] | V-set_3 | e6p95L2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
| H | C1-set_1 | e6p95H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
| H | V-set_12 | e6p95H2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
| F | C1-set_1 | e6p95F1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
| F | V-set_12 | e6p95F2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
| D | C1-set_1 | e6p95D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
| D | V-set_12 | e6p95D2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
| B | Arena_glycoprot_1st | e6p95B1 | A: a+b complex topology | X: Envelope glycoprotein GP1 (From Topology) | H: Envelope glycoprotein GP1 (From Topology) | T: Envelope glycoprotein GP1 | F: Arena_glycoprot_1st | ECOD (1.6) |
| C | Arena_glycoprot_1st | e6p95C1 | A: a+b complex topology | X: Envelope glycoprotein GP1 (From Topology) | H: Envelope glycoprotein GP1 (From Topology) | T: Envelope glycoprotein GP1 | F: Arena_glycoprot_1st | ECOD (1.6) |
| A | Arena_glycoprot_1st | e6p95A1 | A: a+b complex topology | X: Envelope glycoprotein GP1 (From Topology) | H: Envelope glycoprotein GP1 (From Topology) | T: Envelope glycoprotein GP1 | F: Arena_glycoprot_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| E | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| G | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| I [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| H | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| F | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| E, G, I [auth L] | Fab 25.6A | L-LAMBDA | Homo sapiens (human) | IGLV2-14*01, IGLJ3*02, IGLC2*01, IGLC2*02, IGLC3*04 | V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA | IG | FAB-GAMMA-1_LAMBDA | IMGT (202545-4) |
| Fab 25.6A | VH-CH1 | Homo sapiens (human) | IGHV3-21*01, IGHV3-21*02, IGHV3-21*04, IGHV3-21*03, IGHJ6*01, IGHG1*03, IGHG1*08, IGHG1*06 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_LAMBDA | IMGT (202545-4) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| E, G, I [auth L] | Light Chain | IGLV2 | Lambda | unknown | pre-glycoprotein polyprotein gp complex | SAbDab (2025-11-14) |
| Heavy Chain | IGHV3 | - | unknown | pre-glycoprotein polyprotein gp complex | SAbDab (2025-11-14) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| J [auth a], K [auth b], L [auth c] | IPR043015 | Arenavirus glycoprotein, zinc binding domain | Homologous Superfamily |
| J [auth a], K [auth b], L [auth c] | IPR001535 | Arenavirus glycoprotein | Family |
| IPR043015 | Arenavirus glycoprotein, zinc binding domain | Homologous Superfamily | |
| IPR001535 | Arenavirus glycoprotein | Family |














