Cryo-EM structure of the Human BRISC-SHMT2 complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth K] | SCOP2B Superfamily | PLP-dependent transferases | 8036728 | 3000954 | SCOP2B (2022-06-29) |
F [auth L] | SCOP2B Superfamily | PLP-dependent transferases | 8036728 | 3000954 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | MPN_BRCC36 | e6r8fA1 | A: alpha bundles | X: BRCC36 C-terminal helical domain (From Topology) | H: BRCC36 C-terminal helical domain (From Topology) | T: BRCC36 C-terminal helical domain | F: MPN_BRCC36 | ECOD (1.6) |
A | JAB_1 | e6r8fA2 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: JAB_1 | ECOD (1.6) |
D [auth C] | MPN_BRCC36 | e6r8fC2 | A: alpha bundles | X: BRCC36 C-terminal helical domain (From Topology) | H: BRCC36 C-terminal helical domain (From Topology) | T: BRCC36 C-terminal helical domain | F: MPN_BRCC36 | ECOD (1.6) |
D [auth C] | JAB_1 | e6r8fC1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: JAB_1 | ECOD (1.6) |
B | UNK_F_TYPE | e6r8fB2 | A: alpha bundles | X: BRCC36 C-terminal helical domain (From Topology) | H: BRCC36 C-terminal helical domain (From Topology) | T: BRCC36 C-terminal helical domain | F: UNK_F_TYPE | ECOD (1.6) |
B | MPN_2A_DUB_like | e6r8fB1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: MPN_2A_DUB_like | ECOD (1.6) |
E [auth D] | UNK_F_TYPE | e6r8fD2 | A: alpha bundles | X: BRCC36 C-terminal helical domain (From Topology) | H: BRCC36 C-terminal helical domain (From Topology) | T: BRCC36 C-terminal helical domain | F: UNK_F_TYPE | ECOD (1.6) |
E [auth D] | MPN_2A_DUB_like | e6r8fD1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: MPN_2A_DUB_like | ECOD (1.6) |
C [auth K] | SHMT | e6r8fK1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: SHMT | ECOD (1.6) |
C [auth K] | Aminotran_5_N | e6r8fK2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: Aminotran_5_N | ECOD (1.6) |
F [auth L] | SHMT | e6r8fL1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: SHMT | ECOD (1.6) |
F [auth L] | Aminotran_5_N | e6r8fL2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: Aminotran_5_N | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth C] | PF18110 | BRCC36 C-terminal helical domain (BRCC36_C) | BRCC36 C-terminal helical domain | This is the C-terminal domain of BRCC36, a Zn2+ dependent deubiquitinating enzyme, present in Camponotus floridanus. BRCC36 hydrolyzes lysine linked ubiquitin chains as part of macromolecular complexes that participate in either interferon signalling ... | Domain |
B, E [auth D] | PF21125 | BRCA1-A complex subunit Abraxas 1 MPN domain (MPN_2A_DUB_like) | BRCA1-A complex subunit Abraxas 1 MPN domain | This entry represents the MPN domain from the Abraxas protein [1-3]. Abraxas is a component of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked polyubiquitin, leaving the last ubiquitin chain attached to its substra ... | Domain |
C [auth K], F [auth L] | PF00464 | Serine hydroxymethyltransferase (SHMT) | Serine hydroxymethyltransferase | Domain | |
G [auth E], H [auth G] | PF06113 | Brain and reproductive organ-expressed protein (BRE) (BRE) | Brain and reproductive organ-expressed protein (BRE) | - | Family |