Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| H [auth O] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070555 | 3001045 | SCOP2B (2022-06-29) |
| L [auth S] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082423 | 3000334 | SCOP2B (2022-06-29) |
| M [auth T] | SCOP2 Family | Ribosomal protein L20 | 8094940 | 4001930 | SCOP2 (2022-06-29) |
| M [auth T] | SCOP2 Superfamily | Ribosomal protein L20 | 8094941 | 3000563 | SCOP2 (2022-06-29) |
| N [auth U] | SCOP2B Superfamily | l21p-like | 8094148 | 3002005 | SCOP2B (2022-06-29) |
| Q [auth X] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082503 | 3000334 | SCOP2B (2022-06-29) |
| S [auth Z] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8075030 | 3000539 | SCOP2B (2022-06-29) |
| U [auth 1] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8094170 | 3000713 | SCOP2B (2022-06-29) |
| Y [auth 7] | SCOP2B Superfamily | L35p-like | 8083334 | 3000790 | SCOP2B (2022-06-29) |
| Z [auth 9] | SCOP2 Family | Iojap/YbeB-like | 8094868 | 4001878 | SCOP2 (2022-06-29) |
| Z [auth 9] | SCOP2 Superfamily | Nucleotidyltransferase-like | 8094869 | 3000129 | SCOP2 (2022-06-29) |
| I [auth P] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8076041 | 3000884 | SCOP2B (2022-06-29) |
| G [auth N] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8093892 | 3000433 | SCOP2B (2022-06-29) |
| F [auth M] | SCOP2B Superfamily | Ribosomal protein L13 | 8066059 | 3001134 | SCOP2B (2022-06-29) |
| E [auth F] | SCOP2B Superfamily | Ribosomal protein L4 | 8094174 | 3001146 | SCOP2B (2022-06-29) |
| D [auth E] | SCOP2B Superfamily | Translational proteins | 8089152 | 3000811 | SCOP2B (2022-06-29) |
| V [auth 2] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8076281 | 3001378 | SCOP2B (2022-06-29) |
| P [auth W] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8086046 | 3000210 | SCOP2B (2022-06-29) |
| O [auth V] | SCOP2B Superfamily | Ribosomal protein L22 | 8076726 | 3001078 | SCOP2B (2022-06-29) |
| J [auth Q] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8089022 | 3000995 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| H [auth O] | Ribosomal_L27A | e6sj6O1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L27A | ECOD (1.6) |
| L [auth S] | Ribosomal_L19 | e6sj6S1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L19 | ECOD (1.6) |
| M [auth T] | Ribosomal_L20 | e6sj6T1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: Ribosomal_L20 | ECOD (1.6) |
| N [auth U] | Ribosomal_L21p | e6sj6U1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: Ribosomal_L21p | ECOD (1.6) |
| Q [auth X] | ribosomal_L24_1 | e6sj6X1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: ribosomal_L24_1 | ECOD (1.6) |
| S [auth Z] | Ribosomal_L27 | e6sj6Z1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: Ribosomal_L27 | ECOD (1.6) |
| T [auth 0] | Ribosomal_L28 | e6sj601 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: Ribosomal_L28 | ECOD (1.6) |
| U [auth 1] | Ribosomal_L29 | e6sj611 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29 | ECOD (1.6) |
| X [auth 6] | Ribosomal_L34 | e6sj661 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: Ribosomal_L34 | ECOD (1.6) |
| Y [auth 7] | Ribosomal_L35p | e6sj671 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: Ribosomal_L35p | ECOD (1.6) |
| Z [auth 9] | RsfS | e6sj691 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: RsfS | ECOD (1.6) |
| I [auth P] | Ribosomal_L16 | e6sj6P1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
| G [auth N] | Ribosomal_L14 | e6sj6N1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
| F [auth M] | Ribosomal_L13 | e6sj6M1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
| E [auth F] | Ribosomal_L4 | e6sj6F1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
| D [auth E] | Ribosomal_L3 | e6sj6E1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
| C [auth D] | Ribosomal_L2_1 | e6sj6D2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
| C [auth D] | Ribosomal_L2_C_2 | e6sj6D1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C_2 | ECOD (1.6) |
| W [auth 4] | Ribosomal_L32p | e6sj641 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L32p | ECOD (1.6) |
| V [auth 2] | Ribosomal_L30 | e6sj621 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30 | ECOD (1.6) |
| R [auth Y] | Ribosomal_L25p | e6sj6Y1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_L25p | ECOD (1.6) |
| P [auth W] | Ribosomal_L23_2 | e6sj6W1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_2 | ECOD (1.6) |
| O [auth V] | Ribosomal_L22 | e6sj6V1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
| K [auth R] | Ribosomal_L18p | e6sj6R1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L18p | ECOD (1.6) |
| J [auth Q] | Ribosomal_L17_1 | e6sj6Q1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: Ribosomal_L17_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| X [auth 6] | 1.10.287.3980 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | CATH (utative) | |
| Z [auth 9] | 3.30.460.10 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 2 | CATH (utative) |
| I [auth P] | 3.90.1170.10 | Alpha Beta | Alpha-Beta Complex | Aldehyde Oxidoreductase | domain 3 | CATH (utative) |
| G [auth N] | 2.40.150.20 | Mainly Beta | Beta Barrel | Ribosomal Protein L14 | Ribosomal protein L14/L23 | CATH (utative) |
| V [auth 2] | 3.30.1390.20 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein L30 | Chain: A, | CATH (utative) |
| P [auth W] | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (utative) |
| O [auth V] | 3.90.470.10 | Alpha Beta | Alpha-Beta Complex | Ribosomal Protein L22 | Chain A | CATH (utative) |
| K [auth R] | 3.30.420.100 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (utative) |
| J [auth Q] | 3.90.1030.10 | Alpha Beta | Alpha-Beta Complex | 50s Ribosomal Protein L17 | Chain: A, | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| H [auth O] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| L [auth S] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| M [auth T] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| Q [auth X] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| Q [auth X] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| U [auth 1] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| X [auth 6] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| Y [auth 7] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| Z [auth 9] | PF02410 | Ribosomal silencing factor during starvation (RsfS) | Ribosomal silencing factor during starvation | - | Family |
| I [auth P] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| G [auth N] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| F [auth M] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| E [auth F] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| D [auth E] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| C [auth D] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| C [auth D] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| W [auth 4] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| V [auth 2] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| P [auth W] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| O [auth V] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| J [auth Q] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |














