6VJK | pdb_00006vjk

Streptavidin mutant M88 (N49C/A86C)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d6vjkl_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	(Streptomyces avidinii ) [TaxId: 1895 ],	SCOPe (2.08)
K	d6vjkk_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	(Streptomyces avidinii ) [TaxId: 1895 ],	SCOPe (2.08)
J	d6vjkj_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	(Streptomyces avidinii ) [TaxId: 1895 ],	SCOPe (2.08)
I	d6vjki_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	(Streptomyces avidinii ) [TaxId: 1895 ],	SCOPe (2.08)
H	d6vjkh_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	(Streptomyces avidinii ) [TaxId: 1895 ],	SCOPe (2.08)
G	d6vjkg_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	(Streptomyces avidinii ) [TaxId: 1895 ],	SCOPe (2.08)
F	d6vjkf_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	(Streptomyces avidinii ) [TaxId: 1895 ],	SCOPe (2.08)
E	d6vjke_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	(Streptomyces avidinii ) [TaxId: 1895 ],	SCOPe (2.08)
D	d6vjkd_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	(Streptomyces avidinii ) [TaxId: 1895 ],	SCOPe (2.08)
C	d6vjkc_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	(Streptomyces avidinii ) [TaxId: 1895 ],	SCOPe (2.08)
B	d6vjkb_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	(Streptomyces avidinii ) [TaxId: 1895 ],	SCOPe (2.08)
A	d6vjka_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	(Streptomyces avidinii ) [TaxId: 1895 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Avidin/streptavidin	8040372	3001465	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Avidin/streptavidin	8040372	3001465	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Avidin/streptavidin	8040372	3001465	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Avidin/streptavidin	8040372	3001465	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Avidin/streptavidin	8040372	3001465	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Avidin/streptavidin	8040372	3001465	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Avidin/streptavidin	8040372	3001465	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Avidin/streptavidin	8040372	3001465	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Avidin/streptavidin	8040372	3001465	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Avidin/streptavidin	8040372	3001465	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Avidin/streptavidin	8040372	3001465	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Avidin/streptavidin	8040372	3001465	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Avidin	e6vjkL1	A: beta barrels	X: Lipocalins/Streptavidin	H: Avidin/Streptavidin (From Topology)	T: Avidin/Streptavidin	F: Avidin	ECOD (1.6)
K	Avidin	e6vjkK1	A: beta barrels	X: Lipocalins/Streptavidin	H: Avidin/Streptavidin (From Topology)	T: Avidin/Streptavidin	F: Avidin	ECOD (1.6)
J	Avidin	e6vjkJ1	A: beta barrels	X: Lipocalins/Streptavidin	H: Avidin/Streptavidin (From Topology)	T: Avidin/Streptavidin	F: Avidin	ECOD (1.6)
I	Avidin	e6vjkI1	A: beta barrels	X: Lipocalins/Streptavidin	H: Avidin/Streptavidin (From Topology)	T: Avidin/Streptavidin	F: Avidin	ECOD (1.6)
H	Avidin	e6vjkH1	A: beta barrels	X: Lipocalins/Streptavidin	H: Avidin/Streptavidin (From Topology)	T: Avidin/Streptavidin	F: Avidin	ECOD (1.6)
G	Avidin	e6vjkG1	A: beta barrels	X: Lipocalins/Streptavidin	H: Avidin/Streptavidin (From Topology)	T: Avidin/Streptavidin	F: Avidin	ECOD (1.6)
F	Avidin	e6vjkF1	A: beta barrels	X: Lipocalins/Streptavidin	H: Avidin/Streptavidin (From Topology)	T: Avidin/Streptavidin	F: Avidin	ECOD (1.6)
E	Avidin	e6vjkE1	A: beta barrels	X: Lipocalins/Streptavidin	H: Avidin/Streptavidin (From Topology)	T: Avidin/Streptavidin	F: Avidin	ECOD (1.6)
D	Avidin	e6vjkD1	A: beta barrels	X: Lipocalins/Streptavidin	H: Avidin/Streptavidin (From Topology)	T: Avidin/Streptavidin	F: Avidin	ECOD (1.6)
C	Avidin	e6vjkC1	A: beta barrels	X: Lipocalins/Streptavidin	H: Avidin/Streptavidin (From Topology)	T: Avidin/Streptavidin	F: Avidin	ECOD (1.6)
B	Avidin	e6vjkB1	A: beta barrels	X: Lipocalins/Streptavidin	H: Avidin/Streptavidin (From Topology)	T: Avidin/Streptavidin	F: Avidin	ECOD (1.6)
A	Avidin	e6vjkA1	A: beta barrels	X: Lipocalins/Streptavidin	H: Avidin/Streptavidin (From Topology)	T: Avidin/Streptavidin	F: Avidin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (utative)
K	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (utative)
J	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (utative)
I	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (utative)
H	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (utative)
G	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (utative)
F	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (utative)
E	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (utative)
D	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (utative)
C	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (utative)
B	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (utative)
A	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF01382	Avidin family (Avidin)	Avidin family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Streptavidin	biotin binding amide binding organic acid binding binding vitamin binding ion binding anion binding carboxylic acid binding heterocyclic compound binding monocarboxylic acid binding small molecule binding sulfur compound binding	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR017889	Avidin-like, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036896	Avidin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR051764	Avidin/Streptavidin-related	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR005468	Avidin/streptavidin	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR005469	Avidin	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.