6VOA | pdb_00006voa

Cryo-EM structure of the BBSome-ARL6 complex

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth E]TPR_15e6voaE1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_15ECOD (1.6)
H [auth A]Rase6voaA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
H [auth A]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF14781Ciliary BBSome complex subunit 2, N-terminal (BBS2_N)Ciliary BBSome complex subunit 2, N-terminal- Repeat
PF14782BBS2 GAE domain (BBS2_GAE)BBS2 GAE domainThis entry represents the gamma-adaptin ear (GAE) domain of BBS2. BBS2 is one of the BBS proteins that form the BBSome complex found in vertebrates and nematodes, including humans, mice, and Caenorhabditis elegans. The BBSome complex is required for ...This entry represents the gamma-adaptin ear (GAE) domain of BBS2. BBS2 is one of the BBS proteins that form the BBSome complex found in vertebrates and nematodes, including humans, mice, and Caenorhabditis elegans. The BBSome complex is required for ciliogenesis, as well as the assembly and movement of intraflagellar transport proteins along the ciliary membrane [1-3].
Domain
PF14783Ciliary BBSome complex subunit 2, middle region (BBS2_Mid)Ciliary BBSome complex subunit 2, middle region- Repeat
C [auth E]PF14559Tetratricopeptide repeat (TPR_19)Tetratricopeptide repeat- Repeat
C [auth E]PF13181Tetratricopeptide repeat (TPR_8)Tetratricopeptide repeat- Repeat
C [auth E]PF13414TPR repeat (TPR_11)TPR repeat- Repeat
D [auth G]PF07289Bardet-Biedl syndrome 5 protein (BBL5)Bardet-Biedl syndrome 5 protein- Family
PF13181Tetratricopeptide repeat (TPR_8)Tetratricopeptide repeat- Repeat
PF13424Tetratricopeptide repeat (TPR_12)Tetratricopeptide repeat- Repeat
G [auth I]PF14728PTHB1 GAE domain (PTHB1_GAE)PTHB1 GAE domainThis entry represents the gamma-adaptin ear (GAE) domain of PTHB1 protein (also known as Bardet-Biedl syndrome 9 protein, BBS9). This protein forms a part of the BBSome complex, which is required for ciliogenesis [1,2]. PTHB1 is the major binding sub ...This entry represents the gamma-adaptin ear (GAE) domain of PTHB1 protein (also known as Bardet-Biedl syndrome 9 protein, BBS9). This protein forms a part of the BBSome complex, which is required for ciliogenesis [1,2]. PTHB1 is the major binding subunit of IFT38 C-terminal domain, which assists the BBSome in some of its roles [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth H]Bardet-Biedl syndrome 18 protein-
Bardet-Biedl syndrome 2 protein homolog-
C [auth E]Bardet-Biedl syndrome 4 protein homolog
D [auth G]Bardet-Biedl syndrome 5 protein homolog
E [auth C]Bardet-Biedl syndrome 7 protein homolog-
Tetratricopeptide repeat domain 8
G [auth I]Bardet-Biedl syndrome 9-
H [auth A]ADP-ribosylation factor-like protein 6
I [auth D]BBS1 domain-containing protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth H]IPR028233Cilia BBSome complex subunit 10Family
IPR055381BBS2, C-terminal helix bundle domainDomain
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR029429Ciliary BBSome complex subunit 2, middle regionDomain
IPR055380BBS2, hairpin domainDomain
IPR016616Bardet-Biedl syndrome 2 proteinFamily
IPR029430Ciliary BBSome complex subunit 2, N-terminalDomain
IPR029333BBS2, GAE domainDomain
IPR055379BBS2, platform domainDomain
C [auth E]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
C [auth E]IPR019734Tetratricopeptide repeatRepeat
D [auth G]IPR014003BBSome complex member BBS5, PH domainDomain
D [auth G]IPR006606BBSome complex member BBS5Family
D [auth G]IPR030804BBSome complex member BBS5/sex-determination protein fem-3Family
D [auth G]IPR011993PH-like domain superfamilyHomologous Superfamily
E [auth C]IPR056332BBS7, beta-propellerDomain
E [auth C]IPR056334BBS7, GAE domainDomain
E [auth C]IPR056333BBS7, platform domainDomain
E [auth C]IPR016575Bardet-Biedl syndrome 7 proteinFamily
E [auth C]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
E [auth C]IPR056335BBS7, helical hairpinDomain
E [auth C]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
IPR019734Tetratricopeptide repeatRepeat
IPR028796Tetratricopeptide repeat protein 8Family
G [auth I]IPR026511Parathyroid hormone-responsive B1Family
G [auth I]IPR055364PTHB1, C-terminal helix bundle domainDomain
G [auth I]IPR055362PTHB1, platform domainDomain
G [auth I]IPR028074PTHB1, GAE domainDomain
G [auth I]IPR028073PTHB1, N-terminal domainDomain
G [auth I]IPR055363PTHB1, hairpin domainDomain
H [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
H [auth A]IPR041839ADP-ribosylation factor-like protein 6Family
H [auth A]IPR005225Small GTP-binding domainDomain
H [auth A]IPR024156Small GTPase superfamily, ARF typeFamily
H [auth A]IPR006689Small GTPase superfamily, ARF/SAR typeFamily
I [auth D]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
I [auth D]IPR028784BBSome complex member BBS1Family
I [auth D]IPR032728Bardet-Biedl syndrome 1, N-terminalDomain
I [auth D]IPR056419Bardet-Biedl syndrome 1 protein, GAE domainDomain

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
mpstrucMONOTOPIC MEMBRANE PROTEINSMembrane Trafficking ProteinsBBSome (complex of 7 Bardet–Biedl syndrome, BBS, proteins), apo form