6WVD | pdb_00006wvd

Human JAGN1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	GFP-like	8096046	3000576	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GFP	e6wvdA1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
A	F_UNCLASSIFIED	e6wvdA2	A: few secondary structure elements	X: Tetraspanin transmembrane domain (From Topology)	H: Tetraspanin transmembrane domain (From Topology)	T: Tetraspanin transmembrane domain	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF07086	Jagunal, ER re-organisation during oogenesis (Jagunal)	Jagunal, ER re-organisation during oogenesis	-	Family
A	PF01353	Green fluorescent protein (GFP)	Green fluorescent protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Green fluorescent protein, Protein jagunal homolog 1 chimera	-	bioluminescence metabolic process cellular process generation of precursor metabolites and energy cellular component organization organelle organization cellular component organization or biogenesis endoplasmic reticulum organization endomembrane system organization developmental process myeloid leukocyte differentiation cellular developmental process hemopoiesis cell development bioluminescence metabolic process cellular process generation of precursor metabolites and energy cellular component organization organelle organization cellular component organization or biogenesis endoplasmic reticulum organization endomembrane system organization developmental process myeloid leukocyte differentiation cellular developmental process hemopoiesis cell development granulocyte differentiation myeloid cell differentiation cell differentiation neutrophil differentiation anatomical structure development leukocyte differentiation primary metabolic process protein metabolic process macromolecule metabolic process insulin metabolic process cellular response to stimulus negative regulation of protein transport regulation of localization establishment of protein localization regulation of cellular process nitrogen compound transport response to stimulus negative regulation of biological process negative regulation of transport cell communication localization negative regulation of secretion carbohydrate homeostasis establishment of localization in cell negative regulation of hormone secretion negative regulation of secretion by cell intracellular protein localization regulation of biological quality regulation of peptide hormone secretion regulation of biological process negative regulation of peptide hormone secretion regulation of hormone levels establishment of protein localization to extracellular region negative regulation of establishment of protein localization intracellular glucose homeostasis protein secretion establishment of localization cellular response to oxygen-containing compound regulation of protein secretion regulation of secretion cellular response to carbohydrate stimulus chemical homeostasis negative regulation of protein secretion regulation of response to stimulus response to glucose response to chemical glucose homeostasis insulin secretion involved in cellular response to glucose stimulus cellular localization regulation of hormone secretion regulation of protein localization regulation of peptide secretion transport signaling homeostatic process negative regulation of signaling hormone secretion negative regulation of cell communication protein localization to extracellular region negative regulation of peptide secretion peptide secretion regulation of secretion by cell secretion by cell response to monosaccharide response to carbohydrate amide transport signal release cellular response to hexose stimulus negative regulation of cellular process intracellular chemical homeostasis cellular response to monosaccharide stimulus negative regulation of protein localization regulation of signaling regulation of transport secretion negative regulation of response to stimulus regulation of peptide transport negative regulation of insulin secretion involved in cellular response to glucose stimulus biological regulation regulation of establishment of protein localization export from cell cell-cell signaling response to oxygen-containing compound cellular response to glucose stimulus regulation of protein transport peptide transport response to hexose cellular response to chemical stimulus cellular homeostasis negative regulation of insulin secretion regulation of cellular localization protein transport regulation of insulin secretion peptide hormone secretion macromolecule localization regulation of insulin secretion involved in cellular response to glucose stimulus hormone transport regulation of cell communication insulin secretion neutrophil mediated immunity immune system process leukocyte mediated immunity myeloid leukocyte mediated immunity immune effector process defense response to fungus biological process involved in interspecies interaction between organisms response to other organism defense response response to stress response to external stimulus response to fungus response to external biotic stimulus response to biotic stimulus leukocyte migration myeloid leukocyte migration cell migration neutrophil migration cell motility granulocyte migration vesicle-mediated transport cell surface receptor signaling pathway granulocyte colony-stimulating factor signaling pathway response to cytokine cytokine-mediated signaling pathway response to peptide cellular response to cytokine stimulus signal transduction exocytosis cellular response to stress response to endoplasmic reticulum stress	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle endoplasmic reticulum cytoplasm intracellular membrane-bounded organelle endomembrane system organelle subcompartment membrane endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network organelle membrane membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle endoplasmic reticulum cytoplasm intracellular membrane-bounded organelle endomembrane system organelle subcompartment membrane endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network organelle membrane endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000786	Green fluorescent protein, GFP	Family
A	IPR011584	Green fluorescent protein-related	Family
A	IPR009017	Green fluorescent protein	Homologous Superfamily
A	IPR009787	Protein jagunal	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q8N5M9	neutropenia autosomal recessive severe congenital neutropenia due to JAGN1 deficiency severe congenital neutropenia leukopenia hematopoietic and lymphoid system neoplasm intellectual disability ovarian cancer

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Alpha-helical polytopic	Jagunal protein family	Jagunal protein family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Novel Membrane Proteins	endoplasmic reticulum protein Jagunal (JAGN1)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.