6XBB | pdb_00006xbb

Crystal structure of Streptomyces sviceus SsDesB in complex with NADP+

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	K_oxygenase_1	e6xbbA2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: K_oxygenase_1	ECOD (1.6)
A	K_oxygenase	e6xbbA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: Nucleotide-binding domain	F: K_oxygenase	ECOD (1.6)
B	K_oxygenase_1	e6xbbB1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: K_oxygenase_1	ECOD (1.6)
B	K_oxygenase	e6xbbB2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: Nucleotide-binding domain	F: K_oxygenase	ECOD (1.6)
C	K_oxygenase_1	e6xbbC1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: K_oxygenase_1	ECOD (1.6)
C	K_oxygenase	e6xbbC2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: Nucleotide-binding domain	F: K_oxygenase	ECOD (1.6)
D	K_oxygenase_1	e6xbbD1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: K_oxygenase_1	ECOD (1.6)
D	K_oxygenase	e6xbbD2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: Nucleotide-binding domain	F: K_oxygenase	ECOD (1.6)
E	K_oxygenase_1	e6xbbE1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: K_oxygenase_1	ECOD (1.6)
E	K_oxygenase	e6xbbE2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: Nucleotide-binding domain	F: K_oxygenase	ECOD (1.6)
F	K_oxygenase_1	e6xbbF1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: K_oxygenase_1	ECOD (1.6)
F	K_oxygenase	e6xbbF2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: Nucleotide-binding domain	F: K_oxygenase	ECOD (1.6)
G	K_oxygenase_1	e6xbbG2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: K_oxygenase_1	ECOD (1.6)
G	K_oxygenase	e6xbbG1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: Nucleotide-binding domain	F: K_oxygenase	ECOD (1.6)
H	K_oxygenase_1	e6xbbH1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: K_oxygenase_1	ECOD (1.6)
H	K_oxygenase	e6xbbH2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: Nucleotide-binding domain	F: K_oxygenase	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF13434	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase (Lys_Orn_oxgnase)	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Monooxigenase	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding oxidoreductase activity monooxygenase activity L-lysine 6-monooxygenase (NADPH) activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) oxidoreductase activity, acting on single donors with incorporation of molecular oxygen catalytic activity	biosynthetic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR025700	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036188	FAD/NAD(P)-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.