6XJL | pdb_00006xjl

Structure of the SM protein Vps45

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASec1_3rde6xjlA3 A: alpha complex topologyX: alpha-helical domain in sec1/munc18-like (SM) proteins (From Topology)H: alpha-helical domain in sec1/munc18-like (SM) proteins (From Topology)T: alpha-helical domain in sec1/munc18-like (SM) proteinsF: Sec1_3rdECOD (1.6)
ASec1_1st_1e6xjlA1 A: a/b three-layered sandwichesX: Rossmann-like domains in Sec1/munc18-like proteins (From Topology)H: Rossmann-like domains in Sec1/munc18-like proteins (From Topology)T: Rossmann-like domains in Sec1/munc18-like proteinsF: Sec1_1st_1ECOD (1.6)
ASec1_2nde6xjlA2 A: a/b three-layered sandwichesX: Rossmann-like domains in Sec1/munc18-like proteins (From Topology)H: Rossmann-like domains in Sec1/munc18-like proteins (From Topology)T: Rossmann-like domains in Sec1/munc18-like proteinsF: Sec1_2ndECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00995Sec1 family (Sec1)Sec1 family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Vps45- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR027482Sec1-like, domain 2Homologous Superfamily
IPR043127Sec1-like, domain 3aHomologous Superfamily
IPR001619Sec1-like proteinFamily
IPR043154Sec1-like, domain 1Homologous Superfamily
IPR036045Sec1-like superfamilyHomologous Superfamily

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALSNARE Protein FamilySec1/Munc18-family (SM) Protein Vps45 in complex with Qa SNARE Tlg2