6XRR | pdb_00006xrr

Structure of SciW bound to the Rhs1 Transmembrane Domain from Salmonella typhimurium

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
K	UNK_F_TYPE	e6xrrK1	A: a+b three layers	X: Mog1p/PsbP-like	H: Mog1p/PsbP-like (From Topology)	T: Mog1p/PsbP-like	F: UNK_F_TYPE	ECOD (1.6)
J [auth H]	UNK_F_TYPE	e6xrrH1	A: a+b three layers	X: Mog1p/PsbP-like	H: Mog1p/PsbP-like (From Topology)	T: Mog1p/PsbP-like	F: UNK_F_TYPE	ECOD (1.6)
H [auth F]	UNK_F_TYPE	e6xrrF1	A: a+b three layers	X: Mog1p/PsbP-like	H: Mog1p/PsbP-like (From Topology)	T: Mog1p/PsbP-like	F: UNK_F_TYPE	ECOD (1.6)
G [auth D]	UNK_F_TYPE	e6xrrD1	A: a+b three layers	X: Mog1p/PsbP-like	H: Mog1p/PsbP-like (From Topology)	T: Mog1p/PsbP-like	F: UNK_F_TYPE	ECOD (1.6)
E [auth B]	UNK_F_TYPE	e6xrrB1	A: a+b three layers	X: Mog1p/PsbP-like	H: Mog1p/PsbP-like (From Topology)	T: Mog1p/PsbP-like	F: UNK_F_TYPE	ECOD (1.6)
D [auth A]	UNK_F_TYPE	e6xrrA1	A: a+b three layers	X: Mog1p/PsbP-like	H: Mog1p/PsbP-like (From Topology)	T: Mog1p/PsbP-like	F: UNK_F_TYPE	ECOD (1.6)
B [auth I]	UNK_F_TYPE	e6xrrI1	A: a+b three layers	X: Mog1p/PsbP-like	H: Mog1p/PsbP-like (From Topology)	T: Mog1p/PsbP-like	F: UNK_F_TYPE	ECOD (1.6)
A [auth E]	UNK_F_TYPE	e6xrrE1	A: a+b three layers	X: Mog1p/PsbP-like	H: Mog1p/PsbP-like (From Topology)	T: Mog1p/PsbP-like	F: UNK_F_TYPE	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
K	3.40.1000.10	Alpha Beta	3-Layer(aba) Sandwich	Protein Transport Mog1p	Chain A	CATH (utative)
J [auth H]	3.40.1000.10	Alpha Beta	3-Layer(aba) Sandwich	Protein Transport Mog1p	Chain A	CATH (utative)
H [auth F]	3.40.1000.10	Alpha Beta	3-Layer(aba) Sandwich	Protein Transport Mog1p	Chain A	CATH (utative)
G [auth D]	3.40.1000.10	Alpha Beta	3-Layer(aba) Sandwich	Protein Transport Mog1p	Chain A	CATH (utative)
E [auth B]	3.40.1000.10	Alpha Beta	3-Layer(aba) Sandwich	Protein Transport Mog1p	Chain A	CATH (utative)
D [auth A]	3.40.1000.10	Alpha Beta	3-Layer(aba) Sandwich	Protein Transport Mog1p	Chain A	CATH (utative)
B [auth I]	3.40.1000.10	Alpha Beta	3-Layer(aba) Sandwich	Protein Transport Mog1p	Chain A	CATH (utative)
A [auth E]	3.40.1000.10	Alpha Beta	3-Layer(aba) Sandwich	Protein Transport Mog1p	Chain A	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E], B [auth I], D [auth A], E [auth B], G [auth D], A [auth E], B [auth I], D [auth A], E [auth B], G [auth D], H [auth F], J [auth H], K	PF08786	DcrB (DcrB)	DcrB	DcrB is a bacterial protein required for phages C1 and C6 adsorption [1,2]. It may be involved in the opening or formation of diffusion channels in the outer membrane [2]. Structurally, it consist of an antiparallel beta sheet with some alpha helical ...	DcrB is a bacterial protein required for phages C1 and C6 adsorption [1,2]. It may be involved in the opening or formation of diffusion channels in the outer membrane [2]. Structurally, it consist of an antiparallel beta sheet with some alpha helical regions.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth J], F [auth C], I [auth G], L	RHS repeat protein	-	-	cellular anatomical structure membrane
A [auth E], B [auth I], D [auth A], E [auth B], G [auth D], A [auth E], B [auth I], D [auth A], E [auth B], G [auth D], H [auth F], J [auth H], K	Putative cytoplasmic protein	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth J], F [auth C], I [auth G], L	IPR050708	Type VI secretion system VgrG/RHS	Family
C [auth J], F [auth C], I [auth G], L	IPR006530	YD repeat	Repeat
C [auth J], F [auth C], I [auth G], L	IPR022385	Rhs repeat-associated core	Domain
C [auth J], F [auth C], I [auth G], L	IPR045351	Domain of unknown function DUF6531	Domain
C [auth J], F [auth C], I [auth G], L	IPR008727	PAAR motif	Repeat
C [auth J], F [auth C], I [auth G], L	IPR029103	Bacterial toxin 47	Domain
C [auth J], F [auth C], I [auth G], L	IPR011044	Quinoprotein amine dehydrogenase, beta chain-like	Homologous Superfamily
C [auth J], F [auth C], I [auth G], L	IPR031325	RHS repeat	Repeat
C [auth J], F [auth C], I [auth G], L	IPR001826	RHS protein, conserved region	Domain
A [auth E], B [auth I], D [auth A], E [auth B], G [auth D], A [auth E], B [auth I], D [auth A], E [auth B], G [auth D], H [auth F], J [auth H], K	IPR014894	Inner membrane lipoprotein DcrB/EagT6	Family
A [auth E], B [auth I], D [auth A], E [auth B], G [auth D], A [auth E], B [auth I], D [auth A], E [auth B], G [auth D], H [auth F], J [auth H], K	IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.