6YEF | pdb_00006yef

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth i]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082669 3000100 SCOP2B (2022-06-29)
H [auth h]SCOP2B SuperfamilyRibosomal protein S8 8079049 3000709 SCOP2B (2022-06-29)
G [auth g]SCOP2B SuperfamilyRibosomal protein S7 8066031 3000799 SCOP2B (2022-06-29)
F [auth f]SCOP2B SuperfamilyRibosomal protein S6 8066489 3001323 SCOP2B (2022-06-29)
YA [auth 8]SCOP2B SuperfamilyRibosomal protein L36 8083312 3001346 SCOP2B (2022-06-29)
XA [auth 7]SCOP2B SuperfamilyL35p-like 8083334 3000790 SCOP2B (2022-06-29)
VA [auth 5]SCOP2B SuperfamilyZn-binding ribosomal proteins 8075068 3001320 SCOP2B (2022-06-29)
UA [auth 4]SCOP2B SuperfamilyZn-binding ribosomal proteins 8081583 3001320 SCOP2B (2022-06-29)
TA [auth 3]SCOP2B SuperfamilyL28p-like 8086138 3001966 SCOP2B (2022-06-29)
SA [auth 2]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8076281 3001378 SCOP2B (2022-06-29)
RA [auth 1]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8094170 3000713 SCOP2B (2022-06-29)
PA [auth Z]SCOP2B SuperfamilyRibosomal L27 protein-like 8075030 3000539 SCOP2B (2022-06-29)
NA [auth X]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082503 3000334 SCOP2B (2022-06-29)
D [auth d]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8083392 3001473 SCOP2B (2022-06-29)
MA [auth W]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8086046 3000210 SCOP2B (2022-06-29)
LA [auth V]SCOP2B SuperfamilyRibosomal protein L22 8076726 3001078 SCOP2B (2022-06-29)
KA [auth U]SCOP2B Superfamilyl21p-like 8094148 3002005 SCOP2B (2022-06-29)
JA [auth T]SCOP2B SuperfamilyRibosomal protein L20 8094941 3000563 SCOP2B (2022-06-29)
IA [auth S]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082423 3000334 SCOP2B (2022-06-29)
GA [auth Q]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8089022 3000995 SCOP2B (2022-06-29)
FA [auth P]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8076041 3000884 SCOP2B (2022-06-29)
EA [auth O]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070555 3001045 SCOP2B (2022-06-29)
DA [auth N]SCOP2B Superfamily50S Ribosomal protein L14-like 8093892 3000433 SCOP2B (2022-06-29)
CA [auth M]SCOP2B SuperfamilyRibosomal protein L13 8066059 3001134 SCOP2B (2022-06-29)
Z [auth F]SCOP2B SuperfamilyRibosomal protein L4 8094174 3001146 SCOP2B (2022-06-29)
Y [auth E]SCOP2B SuperfamilyTranslational proteins 8089152 3000811 SCOP2B (2022-06-29)
B [auth b]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8099284 3001397 SCOP2B (2022-06-29)
S [auth s]SCOP2B SuperfamilyRibosomal protein S19 8086064 3000686 SCOP2B (2022-06-29)
Q [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins 8059272 3000135 SCOP2B (2022-06-29)
P [auth p]SCOP2B SuperfamilyRibosomal protein S16 8066555 3000680 SCOP2B (2022-06-29)
O [auth o]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8072621 3001284 SCOP2B (2022-06-29)
M [auth m]SCOP2B SuperfamilyS13-like H2TH domain 8099266 3000053 SCOP2B (2022-06-29)
L [auth l]SCOP2B SuperfamilyNucleic acid-binding proteins 8098336 3000135 SCOP2B (2022-06-29)
K [auth k]SCOP2B SuperfamilyTranslational machinery components 8099268 3000571 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth i]Ribosomal_S9e6yefi1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
H [auth h]Ribosomal_S8_Ne6yefh1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
H [auth h]Ribosomal_S8_Ce6yefh2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
G [auth g]Ribosomal_S7_1e6yefg1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
F [auth f]Ribosomal_S6e6yeff1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
YA [auth 8]Ribosomal_L36e6yef81 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
XA [auth 7]Ribosomal_L35pe6yef71 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
E [auth e]Ribosomal_S5_Ce6yefe1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
E [auth e]Ribosomal_S5e6yefe2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
WA [auth 6]Ribosomal_L34e6yef61 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
VA [auth 5]Ribosomal_L33e6yef51 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
UA [auth 4]Ribosomal_L32pe6yef41 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
TA [auth 3]Ribosomal_L31e6yef31 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
SA [auth 2]Ribosomal_L30e6yef21 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
RA [auth 1]Ribosomal_L29e6yef11 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
QA [auth 0]Ribosomal_L28e6yef01 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
PA [auth Z]Ribosomal_L27e6yefZ1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
OA [auth Y]Ribosomal_L25pe6yefY1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
NA [auth X]ribosomal_L24_1e6yefX1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
D [auth d]S4e6yefd1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
MA [auth W]Ribosomal_L23_2e6yefW1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
LA [auth V]Ribosomal_L22e6yefV1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
KA [auth U]Ribosomal_L21pe6yefU1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
JA [auth T]Ribosomal_L20e6yefT1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
IA [auth S]Ribosomal_L19e6yefS1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
HA [auth R]Ribosomal_L18pe6yefR1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
GA [auth Q]Ribosomal_L17_1e6yefQ1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
FA [auth P]Ribosomal_L16e6yefP1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
EA [auth O]Ribosomal_L27Ae6yefO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
DA [auth N]Ribosomal_L14e6yefN1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
C [auth c]Ribosomal_S3_Ce6yefc2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
C [auth c]KH_2_1e6yefc1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
CA [auth M]Ribosomal_L13e6yefM1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
BA [auth H]Ribosomal_L6e6yefH2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
BA [auth H]Ribosomal_L6_1e6yefH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
AA [auth G]Ribosomal_L5_Ce6yefG1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
Z [auth F]Ribosomal_L4e6yefF1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
Y [auth E]Ribosomal_L3e6yefE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
X [auth D]Ribosomal_L2_1e6yefD2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
X [auth D]Ribosomal_L2_Ce6yefD1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
T [auth t]Ribosomal_S20pe6yeft1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
B [auth b]Ribosomal_S2e6yefb1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
S [auth s]Ribosomal_S19e6yefs1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
R [auth r]Ribosomal_S18e6yefr1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
Q [auth q]Ribosomal_S17_1e6yefq1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
P [auth p]Ribosomal_S16_1e6yefp1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16_1ECOD (1.6)
O [auth o]Ribosomal_S15_1e6yefo1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
N [auth n]Ribosomal_S14_1e6yefn1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_1ECOD (1.6)
M [auth m]Ribosomal_S13_1e6yefm1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
L [auth l]Ribosom_S12_S23e6yefl1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
K [auth k]Ribosomal_S11e6yefk1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
J [auth j]Ribosomal_S10e6yefj1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
YA [auth 8]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
XA [auth 7]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
WA [auth 6]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
VA [auth 5]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
UA [auth 4]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
TA [auth 3]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
SA [auth 2]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
RA [auth 1]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
OA [auth Y]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
NA [auth X]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
NA [auth X]PF00467KOW motif (KOW)KOW motif- Family
MA [auth W]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
LA [auth V]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
KA [auth U]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
JA [auth T]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
IA [auth S]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
HA [auth R]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
HA [auth R]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
GA [auth Q]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
GA [auth Q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
FA [auth P]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
FA [auth P]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
EA [auth O]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
EA [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
DA [auth N]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
DA [auth N]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
CA [auth M]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
CA [auth M]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
BA [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
BA [auth H]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
AA [auth G]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
AA [auth G]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
Z [auth F]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
Z [auth F]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
Y [auth E]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
Y [auth E]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
Y [auth E]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
X [auth D]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
X [auth D]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
X [auth D]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
X [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
W [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth i]30S ribosomal protein S9
H [auth h]30S ribosomal protein S8
G [auth g]30S ribosomal protein S7
F [auth f]30S ribosomal protein S6
ZA [auth x]P-site tRNA---
YA [auth 8]50S ribosomal protein L36
XA [auth 7]50S ribosomal protein L35
E [auth e]30S ribosomal protein S5
WA [auth 6]50S ribosomal protein L34
VA [auth 5]50S ribosomal protein L33 2
UA [auth 4]50S ribosomal protein L32
TA [auth 3]50S ribosomal protein L31 type B
SA [auth 2]50S ribosomal protein L30
RA [auth 1]50S ribosomal protein L29
QA [auth 0]50S ribosomal protein L28
PA [auth Z]50S ribosomal protein L27
OA [auth Y]50S ribosomal protein L25
NA [auth X]50S ribosomal protein L24
D [auth d]30S ribosomal protein S4
MA [auth W]50S ribosomal protein L23
LA [auth V]50S ribosomal protein L22
KA [auth U]50S ribosomal protein L21
JA [auth T]50S ribosomal protein L20
IA [auth S]50S ribosomal protein L19
HA [auth R]50S ribosomal protein L18
GA [auth Q]50S ribosomal protein L17
FA [auth P]50S ribosomal protein L16
EA [auth O]50S ribosomal protein L15
DA [auth N]50S ribosomal protein L14
C [auth c]30S ribosomal protein S3
CA [auth M]50S ribosomal protein L13
BA [auth H]50S ribosomal protein L6
AA [auth G]50S ribosomal protein L5
Z [auth F]50S ribosomal protein L4
Y [auth E]50S ribosomal protein L3
X [auth D]50S ribosomal protein L2
W [auth B]5S rRNA---
V [auth A]23S rRNA---
U [auth v]mRNA---
T [auth t]30S ribosomal protein S20
B [auth b]30S ribosomal protein S2
S [auth s]30S ribosomal protein S19
R [auth r]30S ribosomal protein S18
Q [auth q]30S ribosomal protein S17
P [auth p]30S ribosomal protein S16
O [auth o]30S ribosomal protein S15
N [auth n]30S ribosomal protein S14
M [auth m]30S ribosomal protein S13
L [auth l]30S ribosomal protein S12
K [auth k]30S ribosomal protein S11
J [auth j]ribosomal protein uS10---
A [auth a]16S rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
I [auth i]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
I [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
I [auth i]IPR000754Small ribosomal subunit protein uS9Family
I [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
H [auth h]IPR000630Small ribosomal subunit protein uS8Family
H [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
H [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
G [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth g]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
G [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth g]IPR000235Small ribosomal subunit protein uS7Family
G [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain
F [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
F [auth f]IPR000529Small ribosomal subunit protein bS6Family
F [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
YA [auth 8]IPR000473Large ribosomal subunit protein bL36Family
YA [auth 8]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
XA [auth 7]IPR021137Large ribosomal subunit protein bL35-likeFamily
XA [auth 7]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
XA [auth 7]IPR001706Large ribosomal subunit protein bL35Family
XA [auth 7]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
E [auth e]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
E [auth e]IPR000851Small ribosomal subunit protein uS5Family
E [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
WA [auth 6]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
WA [auth 6]IPR000271Large ribosomal subunit protein bL34Family
VA [auth 5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
VA [auth 5]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
VA [auth 5]IPR001705Large ribosomal subunit protein bL33Family
VA [auth 5]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
UA [auth 4]IPR002677Large ribosomal subunit protein bL32Family
UA [auth 4]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
UA [auth 4]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
TA [auth 3]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
TA [auth 3]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
TA [auth 3]IPR027493Large ribosomal subunit protein bL31 type BFamily
TA [auth 3]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
SA [auth 2]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
SA [auth 2]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
SA [auth 2]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
RA [auth 1]IPR050063Universal ribosomal protein uL29Family
RA [auth 1]IPR001854Large ribosomal subunit protein uL29Family
RA [auth 1]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
QA [auth 0]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
QA [auth 0]IPR050096Bacterial ribosomal protein bL28Family
QA [auth 0]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
QA [auth 0]IPR026569Large ribosomal subunit protein bL28Family
QA [auth 0]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
PA [auth Z]IPR001684Large ribosomal subunit protein bL27Family
PA [auth Z]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
OA [auth Y]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
OA [auth Y]IPR001021Ribosomal protein bL25, long-formFamily
OA [auth Y]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
OA [auth Y]IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
OA [auth Y]IPR020057Large ribosomal subunit protein bL25, beta domainDomain
OA [auth Y]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
OA [auth Y]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
NA [auth X]IPR003256Large ribosomal subunit protein uL24Family
NA [auth X]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
NA [auth X]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
NA [auth X]IPR005824KOWDomain
NA [auth X]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
NA [auth X]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
D [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
D [auth d]IPR002942RNA-binding S4 domainDomain
D [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
D [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
D [auth d]IPR022801Small ribosomal subunit protein uS4Family
D [auth d]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
MA [auth W]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
MA [auth W]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
MA [auth W]IPR013025Large ribosomal subunit protein uL23-likeFamily
LA [auth V]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
LA [auth V]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
LA [auth V]IPR001063Large ribosomal subunit protein uL22Family
LA [auth V]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
LA [auth V]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
KA [auth U]IPR028909Large ribosomal subunit protein bL21-likeFamily
KA [auth U]IPR001787Large ribosomal subunit protein bL21Family
KA [auth U]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
JA [auth T]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
JA [auth T]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
JA [auth T]IPR005813Large ribosomal subunit protein bL20Family
IA [auth S]IPR001857Large ribosomal subunit protein bL19Family
IA [auth S]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
IA [auth S]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
IA [auth S]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
HA [auth R]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
HA [auth R]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
GA [auth Q]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
GA [auth Q]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
GA [auth Q]IPR000456Large ribosomal subunit protein bL17Family
FA [auth P]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
FA [auth P]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
FA [auth P]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
FA [auth P]IPR016180Large ribosomal subunit protein uL16 domainDomain
FA [auth P]IPR047873Large ribosomal subunit protein uL16Family
EA [auth O]IPR021131Large ribosomal subunit protein uL15/eL18Domain
EA [auth O]IPR030878Large ribosomal subunit protein uL15Family
EA [auth O]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
EA [auth O]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
EA [auth O]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
DA [auth N]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
DA [auth N]IPR000218Large ribosomal subunit protein uL14Family
DA [auth N]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
DA [auth N]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
C [auth c]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
C [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
C [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
C [auth c]IPR004087K Homology domainDomain
C [auth c]IPR004044K Homology domain, type 2Domain
C [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
C [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
C [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
CA [auth M]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
CA [auth M]IPR005822Large ribosomal subunit protein uL13Family
CA [auth M]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
CA [auth M]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
BA [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
BA [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
BA [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
BA [auth H]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
BA [auth H]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
AA [auth G]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
AA [auth G]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
AA [auth G]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
AA [auth G]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
AA [auth G]IPR002132Large ribosomal subunit protein uL5Family
AA [auth G]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
Z [auth F]IPR013005Large ribosomal subunit protein uL4-likeFamily
Z [auth F]IPR002136Large ribosomal subunit protein uL4Family
Z [auth F]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
Y [auth E]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
Y [auth E]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
Y [auth E]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
Y [auth E]IPR000597Large ribosomal subunit protein uL3Family
X [auth D]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
X [auth D]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
X [auth D]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth D]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth D]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
X [auth D]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
X [auth D]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
X [auth D]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
X [auth D]IPR002171Large ribosomal subunit protein uL2Family
T [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
T [auth t]IPR002583Small ribosomal subunit protein bS20Family
B [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth b]IPR001865Small ribosomal subunit protein uS2Family
S [auth s]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
S [auth s]IPR002222Small ribosomal subunit protein uS19Family
S [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
S [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
R [auth r]IPR001648Small ribosomal subunit protein bS18Family
R [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
R [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
Q [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
Q [auth q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
Q [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth q]IPR000266Small ribosomal subunit protein uS17Family
P [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
P [auth p]IPR000307Small ribosomal subunit protein bS16Family
O [auth o]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
O [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
O [auth o]IPR000589Small ribosomal subunit protein uS15Family
N [auth n]IPR001209Small ribosomal subunit protein uS14Family
N [auth n]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
N [auth n]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
N [auth n]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
M [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
M [auth m]IPR001892Small ribosomal subunit protein uS13Family
M [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
M [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
M [auth m]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
L [auth l]IPR006032Small ribosomal subunit protein uS12Family
L [auth l]IPR005679Ribosomal protein uS12, bacteriaFamily
L [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth k]IPR001971Small ribosomal subunit protein uS11Family
K [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
K [auth k]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
K [auth k]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site