7KOD | pdb_00007kod

Cryo-EM structure of heavy chain mouse apoferritin


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad7koda_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Bd7kodb_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Cd7kodc_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Dd7kodd_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Ed7kode_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Fd7kodf_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Gd7kodg_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Hd7kodh_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Id7kodi_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Jd7kodj_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Kd7kodk_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Ld7kodl_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Md7kodm_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Nd7kodn_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Od7kodo_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Pd7kodp_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Qd7kodq_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Rd7kodr_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Sd7kods_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Td7kodt_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Ud7kodu_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Vd7kodv_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Wd7kodw_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Xd7kodx_ All alpha proteins Ferritin-like Ferritin-like Ferritin automated matches Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
USCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyFerritin-like 8063904 3001658 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AFerritine7kodA1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
BFerritine7kodB1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
CFerritine7kodC1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
DFerritine7kodD1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
EFerritine7kodE1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
FFerritine7kodF1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
GFerritine7kodG1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
HFerritine7kodH1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
IFerritine7kodI1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
JFerritine7kodJ1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
KFerritine7kodK1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
LFerritine7kodL1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
MFerritine7kodM1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
NFerritine7kodN1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
OFerritine7kodO1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
PFerritine7kodP1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
QFerritine7kodQ1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
RFerritine7kodR1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
SFerritine7kodS1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
TFerritine7kodT1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
UFerritine7kodU1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
VFerritine7kodV1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
WFerritine7kodW1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)
XFerritine7kodX1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: FerritinF: FerritinECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
B1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
C1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
D1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
E1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
F1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
G1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
H1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
I1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
J1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
K1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
L1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
M1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
N1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
O1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
P1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
Q1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
R1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
S1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
T1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
U1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
V1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
W1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
X1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00210Ferritin-like domain (Ferritin)Ferritin-like domainThis family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Ferritin heavy chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR009040Ferritin-like diiron domainDomain
A, B, C, D, E
IPR012347Ferritin-likeHomologous Superfamily
A, B, C, D, E
IPR009078Ferritin-like superfamilyHomologous Superfamily
A, B, C, D, E
IPR008331Ferritin/DPS domainDomain
A, B, C, D, E
IPR001519FerritinFamily
A, B, C, D, E
IPR014034Ferritin, conserved siteConserved Site