7KWF | pdb_00007kwf

Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H56N mutant with pyruvate bound in the active site and R,R-bislysine bound at the allosteric site


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyAldolase 8059131 3000445 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyAldolase 8059131 3000445 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyAldolase 8059131 3000445 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyAldolase 8059131 3000445 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyAldolase 8059131 3000445 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyAldolase 8059131 3000445 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADHDPSe7kwfA1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DHDPSECOD (1.6)
BDHDPSe7kwfB1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DHDPSECOD (1.6)
FDHDPSe7kwfF1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DHDPSECOD (1.6)
CDHDPSe7kwfC1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DHDPSECOD (1.6)
DDHDPSe7kwfD1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DHDPSECOD (1.6)
EDHDPSe7kwfE1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DHDPSECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (utative)
D3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (utative)
E3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, F
PF00701Dihydrodipicolinate synthetase family (DHDPS)Dihydrodipicolinate synthetase familyThis family has a TIM barrel structure. Domain
C, D, E
PF00701Dihydrodipicolinate synthetase family (DHDPS)Dihydrodipicolinate synthetase familyThis family has a TIM barrel structure. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, F
4-hydroxy-tetrahydrodipicolinate synthase
C, D, E
4-hydroxy-tetrahydrodipicolinate synthase

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B, F
KPI Parent Component: LYS

RESIDAA0287

PSI-MOD :  N6-pyruvic acid 2-iminyl-L-lysine MOD:00292