7LF8 | pdb_00007lf8

Fab 6D12 bound to ApoL2 NTD

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth L]	C1-set_4	e7lf8L2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: C1-set_4	ECOD (1.6)
C [auth L]	V-set	e7lf8L1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
B [auth H]	C1-set_1	e7lf8H2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: C1-set_1	ECOD (1.6)
B [auth H]	V-set_12	e7lf8H1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth L]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
B [auth H]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
C [auth L]	Light Chain	IGKV16	Kappa	apolipoprotein l2	SAbDab (2025-10-17)
B [auth H]	Heavy Chain	IGHV5	-	apolipoprotein l2	SAbDab (2025-10-17)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth L]	Fab 6D12 light chain	-	-	-
B [auth H]	Fab 6D12 heavy chain	-	-	-
A	Apolipoprotein L2	protein binding binding signaling receptor binding lipid binding lipoprotein particle binding protein-containing complex binding protein-lipid complex binding high-density lipoprotein particle binding	acute-phase response response to stimulus defense response response to stress inflammatory response acute inflammatory response lipoprotein metabolic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process localization transport acute-phase response response to stimulus defense response response to stress inflammatory response acute inflammatory response lipoprotein metabolic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process localization transport macromolecule localization lipid localization lipid transport establishment of localization multi-multicellular organism process multicellular organismal process maternal process involved in female pregnancy reproductive process multicellular organismal reproductive process female pregnancy multi-organism reproductive process lipid metabolic process secondary alcohol metabolic process sterol metabolic process steroid metabolic process cholesterol metabolic process alcohol metabolic process small molecule metabolic process	cellular anatomical structure membrane extracellular region membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm cellular anatomical structure membrane extracellular region membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008405	Apolipoprotein L	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q9BQE5	phencyclidine abuse schizophrenia cocaine dependence cannabis dependence cocaine abuse Phencyclidine-Related Disorders ulcerative colitis atypical teratoid rhabdoid tumor cutaneous lupus erythematosus large cell medulloblastoma ovarian cancer psoriasis chronic kidney disease glioblastoma lung cancer phencyclidine abuse schizophrenia cocaine dependence cannabis dependence cocaine abuse Phencyclidine-Related Disorders ulcerative colitis atypical teratoid rhabdoid tumor cutaneous lupus erythematosus large cell medulloblastoma ovarian cancer psoriasis chronic kidney disease glioblastoma lung cancer medulloblastoma Crohn disease malignant glioma osteosarcoma

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth H]	TPO	Parent Component: THR RESID: AA0038 PSI-MOD : O-phospho-L-threonine MOD:00047

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.