Crystallographic structure of a cubic crystal of STMV (80.7 degree rotation about 111) grown from chloride
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| N | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| FA [auth KK] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| EA [auth JJ] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| DA [auth II] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| CA [auth HH] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| BA [auth GG] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| N | EUF07641 | e7m3tN1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| G | EUF07641 | e7m3tG1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| O | EUF07641 | e7m3tO1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| M | EUF07641 | e7m3tM1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| L | EUF07641 | e7m3tL1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| K | EUF07641 | e7m3tK1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| J | EUF07641 | e7m3tJ1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| I | EUF07641 | e7m3tI1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| H | EUF07641 | e7m3tH1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| FA [auth KK] | EUF07641 | e7m3tKK1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| F | EUF07641 | e7m3tF1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| EA [auth JJ] | EUF07641 | e7m3tJJ1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| E | EUF07641 | e7m3tE1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| DA [auth II] | EUF07641 | e7m3tII1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| D | EUF07641 | e7m3tD1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| CA [auth HH] | EUF07641 | e7m3tHH1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| C | EUF07641 | e7m3tC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| BA [auth GG] | EUF07641 | e7m3tGG1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| B | EUF07641 | e7m3tB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
| A | EUF07641 | e7m3tA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| AA [auth n], MA [auth qq] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
| KA [auth kk], Z [auth m] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
| LA [auth ll], Y [auth i] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
| X [auth h] | RNA (5'-R(P*UP*AP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
| IA [auth WW], W [auth e] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
| RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | - | - | - | |
| Coat protein | - | |||
| Coat protein | - | |||
| JA [auth bb] | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | - | - | - |
| Coat protein | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR037164 | Satellite virus coat domain superfamily | Homologous Superfamily | |
| IPR037164 | Satellite virus coat domain superfamily | Homologous Superfamily | |
| IPR037164 | Satellite virus coat domain superfamily | Homologous Superfamily |
