7M57 | pdb_00007m57

Crystallographic structure of a primitive orthorhombic crystal form of STMV

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
WB [auth PP]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
VB [auth OO]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
UB [auth NN]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
TB [auth MM]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
SB [auth LL]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
RB [auth KK]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
QB [auth JJ]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
PB [auth II]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
OB [auth HH]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
NB [auth GG]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
MB [auth FF]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
LB [auth EE]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
KB [auth DD]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
JB [auth CC]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
IB [auth BB]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
WB [auth PP]	EUF07641	e7m57PP1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
VB [auth OO]	EUF07641	e7m57OO1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
UB [auth NN]	EUF07641	e7m57NN1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
TB [auth MM]	EUF07641	e7m57MM1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
SB [auth LL]	EUF07641	e7m57LL1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
RB [auth KK]	EUF07641	e7m57KK1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
QB [auth JJ]	EUF07641	e7m57JJ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
PB [auth II]	EUF07641	e7m57II1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
OB [auth HH]	EUF07641	e7m57HH1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
O	EUF07641	e7m57O1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
NB [auth GG]	EUF07641	e7m57GG1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
N	EUF07641	e7m57N1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
MB [auth FF]	EUF07641	e7m57FF1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
M	EUF07641	e7m57M1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
LB [auth EE]	EUF07641	e7m57EE1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
L	EUF07641	e7m57L1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
KB [auth DD]	EUF07641	e7m57DD1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
K	EUF07641	e7m57K1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
JB [auth CC]	EUF07641	e7m57CC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
J	EUF07641	e7m57J1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
IB [auth BB]	EUF07641	e7m57BB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
I	EUF07641	e7m57I1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
H	EUF07641	e7m57H1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
G	EUF07641	e7m57G1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
F	EUF07641	e7m57F1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
E	EUF07641	e7m57E1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
D	EUF07641	e7m57D1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
C	EUF07641	e7m57C1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
B	EUF07641	e7m57B1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)
A	EUF07641	e7m57A1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: EUF07641	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AB [auth 1], AD [auth vv], BB [auth 2], BD [auth ww], CB [auth 3], AB [auth 1], AD [auth vv], BB [auth 2], BD [auth ww], CB [auth 3], CD [auth xx], DB [auth 4], DD [auth yy], EA [auth e], EB [auth 5], ED [auth zz], FA [auth f], FB [auth 6], GA [auth g], GB [auth 7], HA [auth h], HB [auth 8], IA [auth i], JA [auth j], KA [auth k], LA [auth l], MA [auth m], MC [auth hh], NA [auth n], NC [auth ii], OA [auth o], OC [auth jj], PA [auth p], PC [auth kk], QA [auth q], QC [auth ll], RA [auth r], RC [auth mm], SA [auth s], SC [auth nn], TA [auth t], TC [auth oo], UA [auth u], UC [auth pp], VA [auth v], VC [auth qq], WA [auth w], WC [auth rr], XA [auth x], XC [auth ss], YA [auth y], YC [auth tt], ZA [auth z], ZC [auth uu]	RNA (27-mer)	-	-	-
AA [auth a], AC [auth TT], BA [auth b], BC [auth UU], CA [auth c], AA [auth a], AC [auth TT], BA [auth b], BC [auth UU], CA [auth c], CC [auth VV], DA [auth d], DC [auth WW], EC [auth YY], FC [auth ZZ], GC [auth bb], HC [auth cc], IC [auth dd], JC [auth ee], KC [auth ff], LC [auth gg], P, Q, R, S, T, U, V, W, X, XB [auth QQ], Y, YB [auth RR], Z, ZB [auth SS]	RNA (5'-R(PAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPA)-3')	-	-	-
A, B, C, D, E, A, B, C, D, E, F, G, H, I, IB [auth BB], J, JB [auth CC], K, KB [auth DD], L, LB [auth EE], M, MB [auth FF], N, NB [auth GG], O, OB [auth HH], PB [auth II], QB [auth JJ], RB [auth KK], SB [auth LL], TB [auth MM], UB [auth NN], VB [auth OO], WB [auth PP]	Coat protein	structural molecule activity	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, I, IB [auth BB], J, JB [auth CC], K, KB [auth DD], L, LB [auth EE], M, MB [auth FF], N, NB [auth GG], O, OB [auth HH], PB [auth II], QB [auth JJ], RB [auth KK], SB [auth LL], TB [auth MM], UB [auth NN], VB [auth OO], WB [auth PP]	IPR037164	Satellite virus coat domain superfamily	Homologous Superfamily