7MUD | pdb_00007mud

Legionella pneumophila Dot/Icm T4SS OMC

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Y [auth CL]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
WB [auth HL]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
UD [auth ML]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
SA [auth EL]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
QC [auth JL]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
O [auth BL]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
MB [auth GL]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
KD [auth LL]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
IA [auth DL]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
GC [auth IL]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
E [auth AL]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
CB [auth FL]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
AD [auth KL]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
ZC [auth KK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
X [auth CK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
VB [auth HK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
TD [auth MK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
RA [auth EK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
PC [auth JK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
N [auth BK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
LB [auth GK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
JD [auth LK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
HA [auth DK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
FC [auth IK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
D [auth AK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
BB [auth FK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Y [auth CL]	OmpA	e7mudCL1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
WB [auth HL]	OmpA	e7mudHL1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
UD [auth ML]	OmpA	e7mudML1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
SA [auth EL]	OmpA	e7mudEL1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
QC [auth JL]	OmpA	e7mudJL1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
O [auth BL]	OmpA	e7mudBL1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
MB [auth GL]	OmpA	e7mudGL1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
KD [auth LL]	OmpA	e7mudLL1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
IA [auth DL]	OmpA	e7mudDL1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
GC [auth IL]	OmpA	e7mudIL1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
E [auth AL]	OmpA	e7mudAL1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
CB [auth FL]	OmpA	e7mudFL1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
AD [auth KL]	OmpA	e7mudKL1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
ZC [auth KK]	OmpA	e7mudKK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
X [auth CK]	OmpA	e7mudCK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
VB [auth HK]	OmpA	e7mudHK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
TD [auth MK]	OmpA	e7mudMK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
RA [auth EK]	OmpA	e7mudEK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
PC [auth JK]	OmpA	e7mudJK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
N [auth BK]	OmpA	e7mudBK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
LB [auth GK]	OmpA	e7mudGK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
JD [auth LK]	OmpA	e7mudLK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
HA [auth DK]	OmpA	e7mudDK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
FC [auth IK]	OmpA	e7mudIK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
D [auth AK]	OmpA	e7mudAK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
BB [auth FK]	OmpA	e7mudFK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AD [auth KL], CB [auth FL], E [auth AL], GC [auth IL], IA [auth DL], AD [auth KL], CB [auth FL], E [auth AL], GC [auth IL], IA [auth DL], KD [auth LL], MB [auth GL], O [auth BL], QC [auth JL], SA [auth EL], UD [auth ML], WB [auth HL], Y [auth CL]	PF00691	OmpA family (OmpA)	OmpA family	-	Family
BB [auth FK], D [auth AK], FC [auth IK], HA [auth DK], JD [auth LK], BB [auth FK], D [auth AK], FC [auth IK], HA [auth DK], JD [auth LK], LB [auth GK], N [auth BK], PC [auth JK], RA [auth EK], TD [auth MK], VB [auth HK], X [auth CK], ZC [auth KK]	PF00691	OmpA family (OmpA)	OmpA family	-	Family
AC [auth Hd], B [auth AD], CA [auth Cd], DC [auth ID], ED [auth Kd], AC [auth Hd], B [auth AD], CA [auth Cd], DC [auth ID], ED [auth Kd], FA [auth DD], GB [auth Fd], HD [auth LD], I [auth Ad], JB [auth GD], KC [auth Id], L [auth BD], MA [auth Dd], NC [auth JD], OD [auth Ld], PA [auth ED], QB [auth Gd], RD [auth MD], S [auth Bd], TB [auth HD], UC [auth Jd], V [auth CD], WA [auth Ed], XC [auth KD], YD [auth Md], ZA [auth FD]	PF16816	DotD protein (DotD)	DotD protein	The DotD protein is a component of the Dot/Icm type IVB secretion system. It is involved in the outer membrane targeting of DotH [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
BC [auth Hf], DA [auth Cf], FD [auth Kf], HB [auth Ff], J [auth Af], BC [auth Hf], DA [auth Cf], FD [auth Kf], HB [auth Ff], J [auth Af], LC [auth If], NA [auth Df], PD [auth Lf], RB [auth Gf], T [auth Bf], VC [auth Jf], XA [auth Ef], ZD [auth Mf]	DotF	-	-	cellular anatomical structure membrane
BA [auth CU], DD [auth KU], FB [auth FU], H [auth AU], JC [auth IU], BA [auth CU], DD [auth KU], FB [auth FU], H [auth AU], JC [auth IU], LA [auth DU], ND [auth LU], PB [auth GU], R [auth BU], TC [auth JU], VA [auth EU], XD [auth MU], ZB [auth HU]	Unknown protein fragment	-	-	-
AA [auth CN], CD [auth KN], EB [auth FN], G [auth AN], IC [auth IN], AA [auth CN], CD [auth KN], EB [auth FN], G [auth AN], IC [auth IN], KA [auth DN], MD [auth LN], OB [auth GN], Q [auth BN], SC [auth JN], UA [auth EN], WD [auth MN], YB [auth HN]	Neurogenic locus notch	-	-	-
BD [auth KM], DB [auth FM], F [auth AM], HC [auth IM], JA [auth DM], BD [auth KM], DB [auth FM], F [auth AM], HC [auth IM], JA [auth DM], LD [auth LM], NB [auth GM], P [auth BM], RC [auth JM], TA [auth EM], VD [auth MM], XB [auth HM], Z [auth CM]	DUF2807 domain-containing protein	-	-	-
AD [auth KL], CB [auth FL], E [auth AL], GC [auth IL], IA [auth DL], AD [auth KL], CB [auth FL], E [auth AL], GC [auth IL], IA [auth DL], KD [auth LL], MB [auth GL], O [auth BL], QC [auth JL], SA [auth EL], UD [auth ML], WB [auth HL], Y [auth CL]	Outer membrane protein, OmpA family protein	-	-	cellular anatomical structure membrane
BB [auth FK], D [auth AK], FC [auth IK], HA [auth DK], JD [auth LK], BB [auth FK], D [auth AK], FC [auth IK], HA [auth DK], JD [auth LK], LB [auth GK], N [auth BK], PC [auth JK], RA [auth EK], TD [auth MK], VB [auth HK], X [auth CK], ZC [auth KK]	Inner membrane lipoprotein YiaD	-	-	cellular anatomical structure membrane
AB [auth FH], C [auth AH], EC [auth IH], GA [auth DH], ID [auth LH], AB [auth FH], C [auth AH], EC [auth IH], GA [auth DH], ID [auth LH], KB [auth GH], M [auth BH], OC [auth JH], QA [auth EH], SD [auth MH], UB [auth HH], W [auth CH], YC [auth KH]	Type IV secretion protein IcmK	-	-	-
AC [auth Hd], B [auth AD], CA [auth Cd], DC [auth ID], ED [auth Kd], AC [auth Hd], B [auth AD], CA [auth Cd], DC [auth ID], ED [auth Kd], FA [auth DD], GB [auth Fd], HD [auth LD], I [auth Ad], JB [auth GD], KC [auth Id], L [auth BD], MA [auth Dd], NC [auth JD], OD [auth Ld], PA [auth ED], QB [auth Gd], RD [auth MD], S [auth Bd], TB [auth HD], UC [auth Jd], V [auth CD], WA [auth Ed], XC [auth KD], YD [auth Md], ZA [auth FD]	DotD	-	-	-
A [auth AC], CC [auth IC], EA [auth DC], GD [auth LC], IB [auth GC], A [auth AC], CC [auth IC], EA [auth DC], GD [auth LC], IB [auth GC], K [auth BC], MC [auth JC], OA [auth EC], QD [auth MC], SB [auth HC], U [auth CC], WC [auth KC], YA [auth FC]	DotC	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AD [auth KL], CB [auth FL], E [auth AL], GC [auth IL], IA [auth DL], AD [auth KL], CB [auth FL], E [auth AL], GC [auth IL], IA [auth DL], KD [auth LL], MB [auth GL], O [auth BL], QC [auth JL], SA [auth EL], UD [auth ML], WB [auth HL], Y [auth CL]	IPR006665	OmpA-like domain	Domain
AD [auth KL], CB [auth FL], E [auth AL], GC [auth IL], IA [auth DL], AD [auth KL], CB [auth FL], E [auth AL], GC [auth IL], IA [auth DL], KD [auth LL], MB [auth GL], O [auth BL], QC [auth JL], SA [auth EL], UD [auth ML], WB [auth HL], Y [auth CL]	IPR050330	Bacterial Outer Membrane Structural/Functional	Family
AD [auth KL], CB [auth FL], E [auth AL], GC [auth IL], IA [auth DL], AD [auth KL], CB [auth FL], E [auth AL], GC [auth IL], IA [auth DL], KD [auth LL], MB [auth GL], O [auth BL], QC [auth JL], SA [auth EL], UD [auth ML], WB [auth HL], Y [auth CL]	IPR036737	OmpA-like domain superfamily	Homologous Superfamily
BB [auth FK], D [auth AK], FC [auth IK], HA [auth DK], JD [auth LK], BB [auth FK], D [auth AK], FC [auth IK], HA [auth DK], JD [auth LK], LB [auth GK], N [auth BK], PC [auth JK], RA [auth EK], TD [auth MK], VB [auth HK], X [auth CK], ZC [auth KK]	IPR006665	OmpA-like domain	Domain
BB [auth FK], D [auth AK], FC [auth IK], HA [auth DK], JD [auth LK], BB [auth FK], D [auth AK], FC [auth IK], HA [auth DK], JD [auth LK], LB [auth GK], N [auth BK], PC [auth JK], RA [auth EK], TD [auth MK], VB [auth HK], X [auth CK], ZC [auth KK]	IPR050330	Bacterial Outer Membrane Structural/Functional	Family
BB [auth FK], D [auth AK], FC [auth IK], HA [auth DK], JD [auth LK], BB [auth FK], D [auth AK], FC [auth IK], HA [auth DK], JD [auth LK], LB [auth GK], N [auth BK], PC [auth JK], RA [auth EK], TD [auth MK], VB [auth HK], X [auth CK], ZC [auth KK]	IPR036737	OmpA-like domain superfamily	Homologous Superfamily
AC [auth Hd], B [auth AD], CA [auth Cd], DC [auth ID], ED [auth Kd], AC [auth Hd], B [auth AD], CA [auth Cd], DC [auth ID], ED [auth Kd], FA [auth DD], GB [auth Fd], HD [auth LD], I [auth Ad], JB [auth GD], KC [auth Id], L [auth BD], MA [auth Dd], NC [auth JD], OD [auth Ld], PA [auth ED], QB [auth Gd], RD [auth MD], S [auth Bd], TB [auth HD], UC [auth Jd], V [auth CD], WA [auth Ed], XC [auth KD], YD [auth Md], ZA [auth FD]	IPR038140	DotD superfamily	Homologous Superfamily
AC [auth Hd], B [auth AD], CA [auth Cd], DC [auth ID], ED [auth Kd], AC [auth Hd], B [auth AD], CA [auth Cd], DC [auth ID], ED [auth Kd], FA [auth DD], GB [auth Fd], HD [auth LD], I [auth Ad], JB [auth GD], KC [auth Id], L [auth BD], MA [auth Dd], NC [auth JD], OD [auth Ld], PA [auth ED], QB [auth Gd], RD [auth MD], S [auth Bd], TB [auth HD], UC [auth Jd], V [auth CD], WA [auth Ed], XC [auth KD], YD [auth Md], ZA [auth FD]	IPR031817	DotD protein	Family
A [auth AC], CC [auth IC], EA [auth DC], GD [auth LC], IB [auth GC], A [auth AC], CC [auth IC], EA [auth DC], GD [auth LC], IB [auth GC], K [auth BC], MC [auth JC], OA [auth EC], QD [auth MC], SB [auth HC], U [auth CC], WC [auth KC], YA [auth FC]	IPR031618	Putative type IV secretory system protein	Family