7NSH | pdb_00007nsh

39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth BY]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082519 3000334 SCOP2B (2022-06-29)
EA [auth B9]SCOP2B SuperfamilyRibosomal protein L36 8083322 3001346 SCOP2B (2022-06-29)
RA [auth BG]SCOP2B SuperfamilyRibosome recycling factor, RRF 8100392 3001524 SCOP2B (2022-06-29)
SA [auth BQ]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8076055 3000884 SCOP2B (2022-06-29)
VA [auth BF]SCOP2B SuperfamilyRibosomal protein L4 8096626 3001146 SCOP2B (2022-06-29)
WA [auth BI]SCOP2B SuperfamilyL9 N-domain-like 8070579 3000338 SCOP2B (2022-06-29)
ZA [auth BN]SCOP2B SuperfamilyRibosomal protein L13 8098010 3001134 SCOP2B (2022-06-29)
EB [auth BT]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8089132 3000334 SCOP2B (2022-06-29)
GB [auth BV]SCOP2B Superfamilyl21p-like 8082451 3002005 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B0]Ribosomal_L27e7nshB01 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
B [auth BY]ribosomal_L24_1e7nshBY1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
C [auth Ba]PDCD9e7nshBa1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PDCD9ECOD (1.6)
D [auth B8]Ribosomal_L35pe7nshB81 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
E [auth Bb]PBPe7nshBb1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: PEBP-likeF: PBPECOD (1.6)
F [auth Bc]TGSe7nshBc1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: TGSECOD (1.6)
F [auth Bc]tRNA_SADe7nshBc2 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: ThrRS/AlaRS editing domainF: tRNA_SADECOD (1.6)
G [auth Bd]MRP-L28e7nshBd1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L28 (From Topology)H: Mitochondrial 54S ribosomal protein L28 (From Topology)T: Mitochondrial 54S ribosomal protein L28F: MRP-L28ECOD (1.6)
H [auth Be]MRP-L27e7nshBe1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L27 (From Topology)H: Mitochondrial 54S ribosomal protein L27 (From Topology)T: Mitochondrial 54S ribosomal protein L27F: MRP-L27ECOD (1.6)
I [auth Bf]MRP-S32e7nshBf1 A: extended segmentsX: Mitoribosomal protein mL42 (From Topology)H: Mitoribosomal protein mL42 (From Topology)T: Mitoribosomal protein mL42F: MRP-S32ECOD (1.6)
J [auth Bg]L51_S25_CI-B8e7nshBg1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: L51_S25_CI-B8ECOD (1.6)
K [auth Bh]Ribonucleas_3_3e7nshBh2 A: alpha arraysX: RNase III catalytic domain-like (From Topology)H: RNase III catalytic domain-like (From Topology)T: RNase III catalytic domain-likeF: Ribonucleas_3_3ECOD (1.6)
K [auth Bh]dsrme7nshBh1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: dsrmECOD (1.6)
L [auth Bi]Tim44e7nshBi1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: Tim44ECOD (1.6)
M [auth Bj]MRP-L46e7nshBj1 A: a+b two layersX: beta-GraspH: Nudix (From Topology)T: NudixF: MRP-L46ECOD (1.6)
N [auth Bk]Ribosomal_S10_2e7nshBk1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_2ECOD (1.6)
O [auth Bl]Img2e7nshBl1 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: Img2ECOD (1.6)
P [auth Bm]Ribosomal_L50e7nshBm1 A: alpha bundlesX: ACP-likeH: Acyl-carrier protein (ACP) (From Topology)T: Acyl-carrier protein (ACP)F: Ribosomal_L50ECOD (1.6)
Q [auth Bn]MRP-L51e7nshBn1 A: alpha bundlesX: Long alpha-hairpinH: Mitoribosomal protein mL51 (From Topology)T: Mitoribosomal protein mL51F: MRP-L51ECOD (1.6)
R [auth Bo]EUF08791e7nshBo1 A: extended segmentsX: Mitoribosomal protein mL52 (From Topology)H: Mitoribosomal protein mL52 (From Topology)T: Mitoribosomal protein mL52F: EUF08791ECOD (1.6)
S [auth Bp]MRP_L53e7nshBp1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: MRP_L53ECOD (1.6)
U [auth Bt]MRP-63e7nshBt1 A: extended segmentsX: Mitoribosomal protein mL63 (From Topology)H: Mitoribosomal protein mL63 (From Topology)T: Mitoribosomal protein mL63F: MRP-63ECOD (1.6)
V [auth Bu]RF-1_Ne7nshBu1 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: RF-1_NECOD (1.6)
W [auth Bv]CR6_interacte7nshBv1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L25 (From Topology)H: Mitochondrial 54S ribosomal protein L25 (From Topology)T: Mitochondrial 54S ribosomal protein L25F: CR6_interactECOD (1.6)
X [auth Bw]PDCD9e7nshBw1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PDCD9ECOD (1.6)
Y [auth Bx]Ribosomal_S18e7nshBx1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
BA [auth DL]Ribosomal_L12_N_1e7nshDL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
CA [auth EL]Ribosomal_L12_N_1e7nshEL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
DA [auth FL]Ribosomal_L12_N_1e7nshFL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
FA [auth GL]Ribosomal_L12_N_1e7nshGL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
GA [auth HL]Ribosomal_L12_N_1e7nshHL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
TA [auth LL]Ribosomal_L12e7nshLL1 A: a+b two layersX: ClpS-likeH: ClpS-related (From Topology)T: ClpS-relatedF: Ribosomal_L12ECOD (1.6)
Z [auth CL]Ribosomal_L12_N_1e7nshCL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
AA [auth B1]Ribosomal_L28_1e7nshB11 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Mitoribosomal protein bL28mF: Ribosomal_L28_1ECOD (1.6)
EA [auth B9]Ribosomal_L36e7nshB91 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
IA [auth B2]MRP-L47e7nshB21 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: MRP-L47ECOD (1.6)
JA [auth B3]Ribosomal_L30e7nshB31 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
KA [auth B4]Mitoc_L55e7nshB41 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Mitoc_L55ECOD (1.6)
LA [auth B5]KOG4080e7nshB51 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: KOG4080ECOD (1.6)
MA [auth B6]Ribosomal_L33e7nshB61 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
NA [auth B7]Ribosomal_L34e7nshB71 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
PA [auth BC]GTP_EFTU_D2e7nshBC2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2ECOD (1.6)
PA [auth BC]EFG_IVe7nshBC1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: EFG_IVECOD (1.6)
PA [auth BC]EFG_Ce7nshBC3 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: EFG_CECOD (1.6)
PA [auth BC]EFG_IIe7nshBC5 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: EFG_IIECOD (1.6)
PA [auth BC]MnmE_helical_2nde7nshBC4 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MnmE_helical_2ndECOD (1.6)
QA [auth BD]Ribosomal_L2e7nshBD2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2ECOD (1.6)
QA [auth BD]Ribosomal_L2_Ce7nshBD1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
RA [auth BG]RRFe7nshBG1 A: a+b two layersX: RRF/tRNA synthetase additional domain-likeH: Ribosome recycling factor, RRF (From Topology)T: Ribosome recycling factor, RRFF: RRFECOD (1.6)
SA [auth BQ]Ribosomal_L16e7nshBQ1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
UA [auth BE]Ribosomal_L3e7nshBE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
VA [auth BF]Ribosomal_L4e7nshBF1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
WA [auth BI]Ribosomal_L9_N_1e7nshBI1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_N_1ECOD (1.6)
YA [auth BK]Ribosomal_L11e7nshBK1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
YA [auth BK]Ribosomal_L11_Ne7nshBK2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
ZA [auth BN]Ribosomal_L13e7nshBN1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
AB [auth BO]Ribosomal_L14e7nshBO1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
BB [auth BP]Ribosomal_L27Ae7nshBP1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
CB [auth BR]Ribosomal_L17e7nshBR1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17ECOD (1.6)
DB [auth BS]Ribosomal_L18pe7nshBS1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
EB [auth BT]Ribosomal_L19e7nshBT1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
FB [auth BU]Ribosomal_L20e7nshBU1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
GB [auth BV]Ribosomal_L21pe7nshBV1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
HB [auth BW]Ribosomal_L22e7nshBW1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
IB [auth BX]Ribosomal_L23_2e7nshBX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth BY]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
B [auth BY]PF00467KOW motif (KOW)KOW motif- Family
PF16320Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N)Ribosomal protein L7/L12 dimerisation domainThis is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1]. Domain
PF00542Ribosomal protein L7/L12 C-terminal domain (Ribosomal_L12)Ribosomal protein L7/L12 C-terminal domainDomain
AA [auth B1]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
EA [auth B9]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
HA [auth BA]PF07147Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9)Mitochondrial 28S ribosomal protein S30 (PDCD9)- Family
IA [auth B2]PF06984Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47)Mitochondrial 39-S ribosomal protein L47 (MRP-L47)- Family
JA [auth B3]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
LA [auth B5]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
NA [auth B7]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
PA [auth BC]PF00679Elongation factor G C-terminus (EFG_C)Elongation factor G C-terminusThis domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. Domain
PA [auth BC]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Domain
PA [auth BC]PF14492Elongation Factor G, domain III (EFG_III)Elongation Factor G, domain IIIThis domain is found in Elongation Factor G. It shares a similar structure with domain V (Pfam:PF00679). Structural studies in drosophila indicate this is domain 3 [1]. Domain
PA [auth BC]PF22042Elongation factor G domain 2 (EF-G_D2)Elongation factor G domain 2Elongation factor G (EF-G) catalyzes the translocation step of translation. It consists of five structural domains, this entry represents the second domain [1]. This domain adopts a beta barrel structure. This family also includes domains found in ot ...Elongation factor G (EF-G) catalyzes the translocation step of translation. It consists of five structural domains, this entry represents the second domain [1]. This domain adopts a beta barrel structure. This family also includes domains found in other translation factors such as translation initiation factor IF-2, peptide chain release factor, etc.
Domain
PA [auth BC]PF03764Elongation factor G, domain IV (EFG_IV)Elongation factor G, domain IVThis domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold. Domain
QA [auth BD]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
RA [auth BG]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
RA [auth BG]PF01765Ribosome recycling factor (RRF)Ribosome recycling factorThe ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth [1]. Thus ribosomes are "recycled" and ready for another round of protein synthe ...The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth [1]. Thus ribosomes are "recycled" and ready for another round of protein synthesis.
Domain
SA [auth BQ]PF08561Mitochondrial ribosomal protein L37 (Ribosomal_L37)Mitochondrial ribosomal protein L37- Family
SA [auth BQ]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
UA [auth BE]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
VA [auth BF]PF10210Mitochondrial 28S ribosomal protein S32 (MRP-S32)Mitochondrial 28S ribosomal protein S32- Family
VA [auth BF]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
WA [auth BI]PF04280Tim44-like domain (Tim44)Tim44-like domainTim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostati ...Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [1]. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely. The crystal structure of the C terminal of Tim44 has revealed a large hydrophobic pocket which might play an important role in interacting with the acyl chains of lipid molecules in the mitochondrial membrane [3].
Domain
WA [auth BI]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
XA [auth BJ]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
XA [auth BJ]PF1178839S mitochondrial ribosomal protein L46 (MRP-L46)39S mitochondrial ribosomal protein L46- Family
YA [auth BK]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
YA [auth BK]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
ZA [auth BN]PF10244Mitochondrial ribosomal subunit (MRP-L51)Mitochondrial ribosomal subunit- Family
ZA [auth BN]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
AB [auth BO]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
AB [auth BO]PF18699Mitoribosomal protein mL52 (MRPL52)Mitoribosomal protein mL52- Family
BB [auth BP]PF1078039S ribosomal protein L53/MRP-L53 (MRP_L53)39S ribosomal protein L53/MRP-L53- Family
CB [auth BR]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
DB [auth BS]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
EB [auth BT]PF14978Mitochondrial ribosome protein 63 (MRP-63)Mitochondrial ribosome protein 63- Family
EB [auth BT]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
FB [auth BU]PF00472RF-1 domain (RF-1)RF-1 domainThis domain is found in peptide chain release factors such as RF-1 (Swiss:P07011) and RF-2 (Swiss:P07012), and a number of smaller proteins of unknown function such as Swiss:P40711. This domain contains the peptidyl-tRNA hydrolase activity. The domai ...This domain is found in peptide chain release factors such as RF-1 (Swiss:P07011) and RF-2 (Swiss:P07012), and a number of smaller proteins of unknown function such as Swiss:P40711. This domain contains the peptidyl-tRNA hydrolase activity. The domain contains a highly conserved motif GGQ, where the glutamine is thought to coordinate the water that mediates the hydrolysis.
Domain
FB [auth BU]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
GB [auth BV]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
HB [auth BW]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
IB [auth BX]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B0]Mitochondrial ribosomal protein L27
B [auth BY]uL24m
C [auth Ba]Mitochondrial ribosomal protein L37
D [auth B8]Mitochondrial ribosomal protein L35- -
E [auth Bb]Mitochondrial ribosomal protein L38- -
F [auth Bc]Mitochondrial ribosomal protein L39 -
G [auth Bd]Mitochondrial ribosomal protein L40- -
H [auth Be]Mitochondrial ribosomal protein L41
I [auth Bf]mL42- -
J [auth Bg]Mitochondrial ribosomal protein L43
K [auth Bh]mL44
L [auth Bi]Mitochondrial ribosomal protein L45- -
M [auth Bj]Mitochondrial ribosomal protein L46 -
N [auth Bk]39S ribosomal protein L48, mitochondrial- -
O [auth Bl]Mrpl34
P [auth Bm]Mitochondrial ribosomal protein L50- -
Q [auth Bn]Mitochondrial ribosomal protein L51
R [auth Bo]mL52
S [auth Bp]mL53- -
T [auth Bq]mL54 -
U [auth Bt]Mitochondrial ribosomal protein L57
V [auth Bu]mL62 (ICT1)
W [auth Bv]mL64- -
X [auth Bw]39S ribosomal protein S30, mitochondrial
Y [auth Bx]Mitochondrial ribosomal protein S18A
Mitochondrial ribosomal protein L12
AA [auth B1]Mitochondrial ribosomal protein L28 -
EA [auth B9]Ribosomal protein
HA [auth BA]16S rRNA---
IA [auth B2]Mitochondrial ribosomal protein L47
JA [auth B3]uL30m
KA [auth B4]bL31m
LA [auth B5]bL32m
MA [auth B6]bL33m
NA [auth B7]Mitochondrial ribosomal protein L34
OA [auth BB]CP tRNAPhe---
PA [auth BC]Ribosome-releasing factor 2, mitochondrial
QA [auth BD]uL2m
RA [auth BG]Ribosome-recycling factor, mitochondrial
SA [auth BQ]uL16m
UA [auth BE]ICT1
VA [auth BF]Mitochondrial ribosomal protein L4
WA [auth BI]Mitochondrial ribosomal protein L9
XA [auth BJ]Mitochondrial ribosomal protein L10- -
YA [auth BK]Mitochondrial ribosomal protein L11
ZA [auth BN]uL13m
AB [auth BO]uL14m
BB [auth BP]uL15m---
CB [auth BR]bL17m
DB [auth BS]Mitochondrial ribosomal protein L18
EB [auth BT]Mitochondrial ribosomal protein L19
FB [auth BU]Mitochondrial ribosomal protein L20
GB [auth BV]Mitochondrial ribosomal protein L21
HB [auth BW]uL22m
IB [auth BX]uL23m---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B0]IPR001684Large ribosomal subunit protein bL27Family
B [auth BY]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
B [auth BY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
B [auth BY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
B [auth BY]IPR003256Large ribosomal subunit protein uL24Family
B [auth BY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
B [auth BY]IPR005824KOWDomain
B [auth BY]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
C [auth Ba]IPR052482Mitochondrial large ribosomal subunit mL37Family
C [auth Ba]IPR010793Large ribosomal subunit protein mL37/mL65Family
D [auth B8]IPR019338Large ribosomal subunit protein bL35mFamily
E [auth Bb]IPR036610PEBP-like superfamilyHomologous Superfamily
E [auth Bb]IPR008914Phosphatidylethanolamine-binding proteinFamily
E [auth Bb]IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
F [auth Bc]IPR012676TGS-likeHomologous Superfamily
F [auth Bc]IPR018163Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamilyHomologous Superfamily
F [auth Bc]IPR050062Proline-tRNA synthetaseFamily
F [auth Bc]IPR004095TGSDomain
F [auth Bc]IPR012675Beta-grasp domain superfamilyHomologous Superfamily
G [auth Bd]IPR019192Large ribosomal subunit protein mL40Family
G [auth Bd]IPR039145Large ribosomal subunit protein mL40, metazoa/plantsFamily
H [auth Be]IPR019189Large ribosomal subunit protein mL41Family
I [auth Bf]IPR019346Large ribosomal subunit protein mL42Family
J [auth Bg]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
J [auth Bg]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
J [auth Bg]IPR039927Large ribosomal subunit protein mL43Family
K [auth Bh]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
K [auth Bh]IPR044444Large ribosomal subunit protein mL44, dsRNA binding domain, metazoaDomain
K [auth Bh]IPR055189Large ribosomal subunit protein mL44, endonuclease domainDomain
K [auth Bh]IPR014720Double-stranded RNA-binding domainDomain
L [auth Bi]IPR032710NTF2-like domain superfamilyHomologous Superfamily
L [auth Bi]IPR007379Tim44-like domainDomain
L [auth Bi]IPR051975Mitochondrial Large Ribosomal Subunit mL45Family
M [auth Bj]IPR015797NUDIX hydrolase-like domain superfamilyHomologous Superfamily
M [auth Bj]IPR021757Large ribosomal subunit protein mL46, N-terminalDomain
M [auth Bj]IPR040008Large ribosomal subunit protein mL46Family
M [auth Bj]IPR033650Large ribosomal subunit protein mL46, NUDIX domainDomain
N [auth Bk]IPR027486Small ribosomal subunit protein uS10 domainDomain
N [auth Bk]IPR027487Large ribosomal subunit protein mL48Family
N [auth Bk]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
O [auth Bl]IPR007740Large ribosomal subunit protein mL49Family
P [auth Bm]IPR018305Large ribosomal subunit protein mL50Family
Q [auth Bn]IPR019373Large ribosomal subunit protein mL51Family
R [auth Bo]IPR034596Large ribosomal subunit protein mL52Family
S [auth Bp]IPR019716Large ribosomal subunit protein mL53Family
S [auth Bp]IPR052473Mitochondrial Large Ribosomal Subunit mL53Family
T [auth Bq]IPR013870Large ribosomal subunit protein mL54Family
U [auth Bt]IPR016576Large ribosomal subunit protein mL63Family
V [auth Bu]IPR000352Peptide chain release factor class IDomain
V [auth Bu]IPR052104Mitochondrial Release Factor mL62Family
W [auth Bv]IPR018472Large ribosomal subunit protein mL64Family
W [auth Bv]IPR043035Large ribosomal subunit protein mL64 domain superfamilyHomologous Superfamily
X [auth Bw]IPR039982Large ribosomal subunit protein mL65Family
X [auth Bw]IPR010793Large ribosomal subunit protein mL37/mL65Family
Y [auth Bx]IPR001648Small ribosomal subunit protein bS18Family
Y [auth Bx]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
IPR008932Large ribosomal subunit protein bL12, oligomerizationDomain
IPR013823Large ribosomal subunit protein bL12, C-terminalDomain
IPR036235Large ribosomal subunit protein bL12, oligomerization domain superfamilyHomologous Superfamily
IPR014719Ribosomal protein bL12, C-terminal/adaptor protein ClpS-likeHomologous Superfamily
IPR000206Large ribosomal subunit protein bL12Family
AA [auth B1]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
AA [auth B1]IPR026569Large ribosomal subunit protein bL28Family
AA [auth B1]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
EA [auth B9]IPR000473Large ribosomal subunit protein bL36Family
EA [auth B9]IPR052143Mitochondrial Large Ribosomal Subunit bL36mFamily
EA [auth B9]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
IA [auth B2]IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
IA [auth B2]IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
JA [auth B3]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
JA [auth B3]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
JA [auth B3]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
KA [auth B4]IPR044884Large ribosomal subunit protein mL55 superfamilyHomologous Superfamily
KA [auth B4]IPR018615Large ribosomal subunit protein mL55Family
LA [auth B5]IPR002677Large ribosomal subunit protein bL32Family
LA [auth B5]IPR051991Mitochondrial ribosomal protein bL32Family
LA [auth B5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
MA [auth B6]IPR052008Mitochondrial ribosomal protein bL33Family
MA [auth B6]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
MA [auth B6]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
MA [auth B6]IPR001705Large ribosomal subunit protein bL33Family
NA [auth B7]IPR000271Large ribosomal subunit protein bL34Family
PA [auth BC]IPR005225Small GTP-binding domainDomain
PA [auth BC]IPR005517Translation elongation factor EFG/EF2, domain IVDomain
PA [auth BC]IPR000795Translational (tr)-type GTP-binding domainDomain
PA [auth BC]IPR000640Elongation factor EFG, domain V-likeDomain
PA [auth BC]IPR031157Tr-type G domain, conserved siteConserved Site
PA [auth BC]IPR009022Elongation factor G, domain IIIDomain
PA [auth BC]IPR035647EF-G domain III/V-likeHomologous Superfamily
PA [auth BC]IPR053905Elongation factor G-like, domain IIDomain
PA [auth BC]IPR041095Elongation Factor G, domain IIDomain
PA [auth BC]IPR030851Ribosome-releasing factor 2, mitochondrialFamily
PA [auth BC]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
PA [auth BC]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
PA [auth BC]IPR035649EFG, domain VDomain
PA [auth BC]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
PA [auth BC]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
QA [auth BD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
QA [auth BD]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
QA [auth BD]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
QA [auth BD]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
QA [auth BD]IPR002171Large ribosomal subunit protein uL2Family
RA [auth BG]IPR023584Ribosome recycling factor domainDomain
RA [auth BG]IPR036191RRF superfamilyHomologous Superfamily
RA [auth BG]IPR002661Ribosome recycling factorFamily
SA [auth BQ]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
SA [auth BQ]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
SA [auth BQ]IPR016180Large ribosomal subunit protein uL16 domainDomain
SA [auth BQ]IPR047873Large ribosomal subunit protein uL16Family
UA [auth BE]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
UA [auth BE]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
UA [auth BE]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
UA [auth BE]IPR000597Large ribosomal subunit protein uL3Family
VA [auth BF]IPR013005Large ribosomal subunit protein uL4-likeFamily
VA [auth BF]IPR002136Large ribosomal subunit protein uL4Family
VA [auth BF]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
WA [auth BI]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
WA [auth BI]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
WA [auth BI]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
WA [auth BI]IPR054302Large ribosomal subunit protein bL9m, C-terminal domainDomain
WA [auth BI]IPR056864Large ribosomal subunit protein bL9m, N-terminal domainDomain
WA [auth BI]IPR000244Large ribosomal subunit protein bL9Family
XA [auth BJ]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
XA [auth BJ]IPR001790Large ribosomal subunit protein uL10Family
XA [auth BJ]IPR047865Large ribosomal subunit protein uL10, bacteria/organellaFamily
YA [auth BK]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
YA [auth BK]IPR000911Ribosomal protein uL11Family
YA [auth BK]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
YA [auth BK]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
ZA [auth BN]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
ZA [auth BN]IPR005822Large ribosomal subunit protein uL13Family
ZA [auth BN]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
ZA [auth BN]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
AB [auth BO]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
AB [auth BO]IPR000218Large ribosomal subunit protein uL14Family
CB [auth BR]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
CB [auth BR]IPR000456Large ribosomal subunit protein bL17Family
DB [auth BS]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
DB [auth BS]IPR057268Large ribosomal subunit protein uL18Family
DB [auth BS]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
EB [auth BT]IPR001857Large ribosomal subunit protein bL19Family
EB [auth BT]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
EB [auth BT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FB [auth BU]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
FB [auth BU]IPR005813Large ribosomal subunit protein bL20Family
GB [auth BV]IPR028909Large ribosomal subunit protein bL21-likeFamily
GB [auth BV]IPR001787Large ribosomal subunit protein bL21Family
GB [auth BV]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
HB [auth BW]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
HB [auth BW]IPR001063Large ribosomal subunit protein uL22Family
HB [auth BW]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily